RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA473799" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA473799 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8098467 8098467 PRJNA473799_P_NODE_13607_length_296_cov_1.004484_g13333_i0 PRJNA473799 13607 296 1.004484 2.97327264 Cryptosporidium sp. duck-like genotype 1856839 SAR_Eukaryotes SAR_Eukaryotes 137 7.38e-28   NTclustered gi|1272609485|gb|KY882340.1| 1856839 g13333 i0 94.382 32.3310810810811 89 5 30 0 1 89 189 101 Cryptosporidium sp. duck-like genotype isolate UY5645 28S ribosomal RNA gene, partial sequence blastn 9570 137 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. duck-like genotype
9373390 9373390 PRJNA473799_P_NODE_30728_length_257_cov_2.478261_g30454_i0 PRJNA473799 30728 257 2.478261 6.36913077 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 241 4.65e-59   NTclustered gi|820695469|tpe|LN714488.1| 572307 g30454 i0 87.923 1.61089494163424 207 21 80 4 2 206 80544 80340 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 414 241 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
18297605 18297605 PRJNA473799_P_NODE_57055_length_227_cov_3.064935_g56781_i0 PRJNA473799 57055 227 3.064935 6.95740245 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 281 2.37e-71   NTclustered gi|820695469|tpe|LN714488.1| 572307 g56781 i0 89.083 1.99559471365639 229 21 100 4 1 227 80266 80492 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 453 281 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;