RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA473799" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA473799 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5549045 5549045 PRJNA473799_P_NODE_13805_length_294_cov_1.357466_g13531_i0 PRJNA473799 13805 294 1.357466 3.99095004 Phalansterium solitarium 136499 Evosea other_Eukaryota 141 5.66e-29   NTclustered gi|300078500|gb|GU001162.1| 136499 g13531 i0 77.912 41.2448979591837 249 40 83 12 1 244 3318 3080 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12126 141 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
6823360 6823360 PRJNA473799_P_NODE_35266_length_251_cov_0.865169_g34992_i0 PRJNA473799 35266 251 0.865169 2.17157419 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 409 1.17e-109   NTclustered gi|909719645|gb|KT185625.1| 5778 g34992 i0 96.016 27.7768924302789 251 10 100 0 1 251 6760 7010 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6972 409 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10649733 10649733 PRJNA473799_P_NODE_7029_length_418_cov_11.165217_g6757_i0 PRJNA473799 7029 418 11.165217 46.67060706 Kanabo kenzan 3014014 Evosea other_Eukaryota 761 0   NTclustered gi|2413992649|gb|OQ054989.1| 3014014 g6757 i0 99.522 107.698564593301 418 2 100 0 1 418 433 16 Kanabo kenzan isolate MSU21 small subunit ribosomal RNA gene, complete sequence; and internal transcribed spacer 1, partial sequence blastn 45018 761 1 Eukaryota Amoebozoa   Evosea Variosea Profiliida   Kanabo Kanabo kenzan
18947469 18947469 PRJNA473799_P_NODE_6815_length_429_cov_5.969101_g6543_i0 PRJNA473799 6815 429 5.969101 25.60744329 Kanabo 3134259 Root_unresolved Root_unresolved 793 0   NTclustered gi|1750644401|gb|MN508059.1| 2650216 g6543 i0 100 65.7995337995338 429 0 100 0 1 429 1681 1253 Amoebozoa sp. Union16-1-3 small subunit ribosomal RNA gene, partial sequence blastn 28228 793 1 Eukaryota Amoebozoa             Amoebozoa sp. Union16-1-3
23397570 23397570 PRJNA473799_P_NODE_10179_length_330_cov_2.821012_g9905_i0 PRJNA473799 10179 330 2.821012 9.3093396 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 564 3.23e-156   NTclustered gi|54306228|gb|AY626163.1| 297386 g9905 i0 97.576 81.6727272727273 330 7 100 1 1 330 642 970 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 26952 564 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;