RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA473641" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473641 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
444844 444844 PRJNA473641_P_NODE_1321_length_696_cov_2.409310_g1243_i0 PRJNA473641 1321 696 2.40931 16.7687976 Philodina citrina 468664 Rotifera other_Eukaryota 590 1.1899999999999996e-163   NTclustered gi|407227484|emb|FR856884.1| 468664 g1243 i0 82.496 18.2672413793103 697 98 99 22 1 686 1681 2364 Philodina citrina complete mitochondrial genome blastn 12714 590 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
8097980 8097980 PRJNA473641_P_NODE_1587_length_650_cov_1.542461_g1507_i0 PRJNA473641 1587 650 1.542461 10.0259965 Lecane bulla 96446 Rotifera other_Eukaryota 771 0   NTclustered gi|1800242915|gb|MN983090.1| 96446 g1507 i0 88.54 95.7661538461538 637 71 98 2 15 650 656 21 Lecane bulla isolate LbullaMAG306 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial blastn 62248 771 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
13198844 13198844 PRJNA473641_P_NODE_5011_length_405_cov_2.319277_g4928_i0 PRJNA473641 5011 405 2.319277 9.39307185 Brachionus rubens 392764 Rotifera other_Eukaryota 248 4.62e-61   NTclustered gi|632795131|gb|KJ489418.1| 392764 g4928 i0 84.524 5.25185185185185 252 37 62 2 65 315 5986 6236 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 2127 248 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
17022629 17022629 PRJNA473641_P_NODE_7414_length_351_cov_1.107914_g7331_i0 PRJNA473641 7414 351 1.107914 3.88877814 Brachionus rubens 392764 Rotifera other_Eukaryota 296 1.39e-75   NTclustered gi|632795131|gb|KJ489418.1| 392764 g7331 i0 85.121 78.5612535612536 289 43 82 0 61 349 1010 1298 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 27575 296 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
19570939 19570939 PRJNA473641_P_NODE_4176_length_437_cov_1.104396_g4093_i0 PRJNA473641 4176 437 1.104396 4.82621052 Brachionus koreanus 1199090 Rotifera other_Eukaryota 99 5.35e-16   NTclustered gi|1252327087|gb|KY828435.1| 1199090 g4093 i0 81.6 5.98398169336384 125 17 29 6 3 127 769 887 Brachionus koreanus elongation factor 1 alpha mRNA, partial cds blastn 2615 99 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus koreanus
22121717 22121717 PRJNA473641_P_NODE_5338_length_396_cov_2.616099_g5255_i0 PRJNA473641 5338 396 2.616099 10.35975204 Eosphora ehrenbergi 104793 Rotifera other_Eukaryota 182 4.63e-41   NTclustered gi|6018205|gb|AF143858.1|AF143858 104793 g5255 i0 76.676 56.9444444444444 343 70 86 7 4 344 344 10 Eosphora ehrenbergi 82 kD heat shock protein (hsp82) gene, partial cds blastn 22550 182 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Notommatidae Eosphora Eosphora ehrenbergi
24047406 24047406 PRJNA473641_P_NODE_14199_length_275_cov_1.143564_g14116_i0 PRJNA473641 14199 275 1.143564 3.144801 Eurotatoria 2816136 Rotifera other_Eukaryota 364 2.859999999999999e-96   NTclustered gi|134141720|gb|EF173224.1| 104782 g14116 i0 90.545 99.8 275 26 100 0 1 275 86 360 Adineta vaga isolate UK.5.2 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 27445 364 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;