RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA473641" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473641 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1719996 1719996 PRJNA473641_P_NODE_25962_length_241_cov_0.916667_g25879_i0 PRJNA473641 25962 241 0.916667 2.20916747 Xylobolus sp. 101 OA-2013 1321930 Fungi Fungi 424 3.99e-114   NTclustered gi|480327092|gb|JX535115.1| 1321930 g25879 i0 98.34 106.082987551867 241 4 100 0 1 241 1402 1642 Xylobolus sp. 101 OA-2013 large subunit ribosomal RNA gene, partial sequence blastn 25566 424 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Russulales Stereaceae Xylobolus Xylobolus sp. 101 OA-2013
22121413 22121413 PRJNA473641_P_NODE_16458_length_255_cov_2.532967_g16375_i0 PRJNA473641 16458 255 2.532967 6.45906585 Rhodofomes roseus 34475 Fungi Fungi 60.2 1.38e-4   NTclustered gi|2234717969|ref|XM_047924648.1| 34475 g16375 i0 100 0.349019607843137 32 0 13 0 39 70 1321 1290 Fomitopsis rosea uncharacterized protein (C8Q71DRAFT_776295), mRNA blastn 89 60.2 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Fomitopsidaceae Rhodofomes Rhodofomes roseus
24671117 24671117 PRJNA473641_P_NODE_1940_length_597_cov_3.763359_g1858_i0 PRJNA473641 1940 597 3.763359 22.46725323 Pseudozyma flocculosa 84751 Fungi Fungi 311 8.83e-80   NTclustered gi|630959971|ref|XM_007878203.1| 1277687 g1858 i0 79.505 45.9128978224456 444 86 74 5 40 481 10 450 Pseudozyma flocculosa PF-1 calmodulin (PFL1_00701), partial mRNA blastn 27410 311 1 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Pseudozyma Pseudozyma flocculosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;