RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA473641" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA473641 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11923812 11923812 PRJNA473641_P_NODE_25270_length_242_cov_0.911243_g25187_i0 PRJNA473641 25270 242 0.911243 2.20520806 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 122 1.6399999999999998e-23   NTclustered gi|71407514|ref|XM_801128.1| 5693 g25187 i0 87.736 42.7685950413223 106 11 43 2 21 125 1545 1441 Trypanosoma cruzi heat shock 70 kDa protein, mitochondrial precursor, putative (Tc00.1047053507029.30), partial mRNA blastn 10350 122 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
17022376 17022376 PRJNA473641_P_NODE_2054_length_584_cov_1.393346_g1972_i0 PRJNA473641 2054 584 1.393346 8.13714064 Dimastigella trypaniformis 35226 Euglenozoa other_Eukaryota 364 6.529999999999998e-96   NTclustered gi|25986820|gb|AY122624.1| 35226 g1972 i0 79.083 94.9657534246575 545 103 93 10 5 545 1158 621 Dimastigella trypaniformis strain Ulm heat shock protein 90 (HSP-90) gene, partial cds blastn 55460 364 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Dimastigella Dimastigella trypaniformis
24671085 24671085 PRJNA473641_P_NODE_17860_length_250_cov_0.966102_g17777_i0 PRJNA473641 17860 250 0.966102 2.415255 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 185 2.14e-42   NTclustered gi|226347420|gb|FJ807250.1| 127150 g17777 i0 84.293 47.288 191 28 76 2 20 209 977 1166 Rhynchomonas nasuta strain ATCC 50292 elongation factor 1 alpha mRNA, partial cds blastn 11822 185 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;