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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA473201" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473201 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6821240 6821240 PRJNA473201_P_NODE_27986_length_372_cov_3.096990_g27244_i0 PRJNA473201 27986 372 3.09699 11.5208028 Pristionchus hoplostomus 1355913 Nematoda Nematoda 161 5.63e-35   NTclustered gi|524845312|gb|KC819366.1| 1355913 g27244 i0 80.717 28.502688172043 223 29 58 11 63 278 49 264 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 10603 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
10648077 10648077 PRJNA473201_P_NODE_65189_length_252_cov_11.960894_g64447_i0 PRJNA473201 65189 252 11.960894 30.14145288 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.006   NTclustered gi|687865727|emb|LK927732.1| 6239 g64447 i0 100 0.23015873015873 29 0 12 0 222 250 79462 79434 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000178 blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10648428 10648428 PRJNA473201_P_NODE_82749_length_242_cov_0.911243_g82007_i0 PRJNA473201 82749 242 0.911243 2.20520806 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 87.9 5.98e-13   NTclustered gi|150982147|gb|EF634662.1| 452809 g82007 i0 86.25 0.611570247933884 80 11 33 0 163 242 410 331 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 148 87.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
14473312 14473312 PRJNA473201_P_NODE_84712_length_241_cov_0.916667_g83970_i0 PRJNA473201 84712 241 0.916667 2.20916747 Caenorhabditis elegans 6239 Nematoda Nematoda 446 8.519999999999999e-121   NTclustered gi|1831511604|ref|NM_001268223.3| 6239 g83970 i0 100 6.37344398340249 241 0 100 0 1 241 1116 876 Caenorhabditis elegans uncharacterized protein (brp-1), partial mRNA blastn 1536 446 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15746373 15746373 PRJNA473201_P_NODE_33513_length_342_cov_28.334572_g32771_i0 PRJNA473201 33513 342 28.334572 96.90423624 Philometra sp. HZ-2022 3016125 Nematoda Nematoda 56.5 0.002   NTclustered gi|2416169854|gb|OM469015.1| 3016125 g32771 i0 100 0.087719298245614 30 0 9 0 77 106 5557 5586 Philometra sp. HZ-2022 mitochondrion, complete genome blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Philometridae Philometra Philometra sp. HZ-2022
17021800 17021800 PRJNA473201_P_NODE_73594_length_247_cov_0.885057_g72852_i0 PRJNA473201 73594 247 0.885057 2.18609079 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.022   NTclustered gi|687866048|emb|LK927941.1| 6239 g72852 i0 100 0.340080971659919 28 0 11 0 47 74 3614 3641 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000060 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19569471 19569471 PRJNA473201_P_NODE_35756_length_333_cov_1.180769_g35014_i0 PRJNA473201 35756 333 1.180769 3.93196077 Caenorhabditis elegans 6239 Nematoda Nematoda 616 8.87e-172   NTclustered gi|1972264646|ref|NM_066119.9| 6239 g35014 i0 100 93.3663663663664 333 0 100 0 1 333 1177 845 Caenorhabditis elegans Elongation factor 1-alpha (eef-1A.1), mRNA blastn 31091 616 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24669533 24669533 PRJNA473201_P_NODE_18060_length_467_cov_5.177665_g17318_i0 PRJNA473201 18060 467 5.177665 24.17969555 Pristionchus pauli 376545 Nematoda Nematoda 292 2.4599999999999993e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g17318 i0 81.492 4.83083511777302 362 61 77 6 62 420 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;