RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA473201" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA473201 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1094401 1094401 PRJNA473201_P_NODE_1_length_15233_cov_14.106596_g0_i0 PRJNA473201 1 15233 14.106596 2148.85776868 Orthorubulavirus 2560195 Viruses Viruses 28009 0   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g0 i0 99.856 70.283660473971 15233 22 100 0 1 15233 15239 7 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 1070631 28075 0.997649154051647 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
6821235 6821235 PRJNA473201_P_NODE_27866_length_373_cov_1.820000_g27124_i0 PRJNA473201 27866 373 1.82 6.7886 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 76.8 2.11e-9   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g27124 i0 97.778 0.967828418230563 45 0 12 1 1 44 24 68 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 361 76.8 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
17021516 17021516 PRJNA473201_P_NODE_60094_length_266_cov_1.196891_g59352_i0 PRJNA473201 60094 266 1.196891 3.18373006 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 95.3 3.99e-15   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g59352 i0 95 1.62781954887218 60 3 23 0 1 60 23 82 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 433 95.3 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
17021886 17021886 PRJNA473201_P_NODE_77394_length_245_cov_0.895349_g76652_i0 PRJNA473201 77394 245 0.895349 2.19360505 Betacytorhabdovirus hordei 3427192 Viruses Viruses 440 4.0399999999999986e-119   NTclustered gi|761662709|gb|KM213865.1| 1985699 g76652 i0 99.18 2.98775510204082 244 2 99 0 1 244 7522 7279 Barley yellow striate mosaic virus strain Hebei, complete genome blastn 732 440 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Betacytorhabdovirus Betacytorhabdovirus hordei
23396174 23396174 PRJNA473201_P_NODE_49979_length_292_cov_1.251142_g49237_i0 PRJNA473201 49979 292 1.251142 3.65333464 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 106 2.05e-18   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g49237 i0 95.522 0.845890410958904 67 2 23 1 227 292 70 4 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 247 106 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
23396385 23396385 PRJNA473201_P_NODE_61199_length_263_cov_1.215789_g60457_i0 PRJNA473201 61199 263 1.215789 3.19752507 Betacytorhabdovirus hordei 3427192 Viruses Viruses 486 5.5499999999999986e-133   NTclustered gi|761662709|gb|KM213865.1| 1985699 g60457 i0 100 3 263 0 100 0 1 263 2789 2527 Barley yellow striate mosaic virus strain Hebei, complete genome blastn 789 486 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Betacytorhabdovirus Betacytorhabdovirus hordei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;