RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA473201" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA473201 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1718737 1718737 PRJNA473201_P_NODE_44022_length_307_cov_1.594017_g43280_i0 PRJNA473201 44022 307 1.594017 4.89363219 Hydra vulgaris 6087 Cnidaria other_Eukaryota 54.7 0.008   NTclustered gi|2744878162|ref|XR_010640800.1| 6087 g43280 i0 94.444 0.117263843648208 36 0 12 2 21 56 127 160 PREDICTED: Hydra vulgaris uncharacterized LOC136084710 (LOC136084710), ncRNA blastn 36 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
8097214 8097214 PRJNA473201_P_NODE_56467_length_275_cov_23.920792_g55725_i0 PRJNA473201 56467 275 23.920792 65.782178 Anemonia sulcata 6108 Cnidaria other_Eukaryota 52.8 0.025   NTclustered gi|2917940687|emb|OZ237555.1| 6108 g55725 i0 100 0.101818181818182 28 0 10 0 76 103 1941661 1941688 Anemonia sulcata genome assembly, chromosome: 1 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
8097529 8097529 PRJNA473201_P_NODE_71887_length_248_cov_0.880000_g71145_i0 PRJNA473201 71887 248 0.88 2.1824 Anemonia sulcata 6108 Cnidaria other_Eukaryota 54.7 0.006   NTclustered gi|2917940740|emb|OZ237567.1| 6108 g71145 i0 96.875 0.129032258064516 32 1 13 0 25 56 9320958 9320989 Anemonia sulcata genome assembly, chromosome: 13 blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
11922805 11922805 PRJNA473201_P_NODE_58350_length_270_cov_25.243655_g57608_i0 PRJNA473201 58350 270 25.243655 68.1578685 Anemonia sulcata 6108 Cnidaria other_Eukaryota 52.8 0.025   NTclustered gi|2917940693|emb|OZ237556.1| 6108 g57608 i0 100 0.103703703703704 28 0 10 0 113 140 444 417 Anemonia sulcata genome assembly, chromosome: 2 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
18946275 18946275 PRJNA473201_P_NODE_37935_length_324_cov_1.569721_g37193_i0 PRJNA473201 37935 324 1.569721 5.08589604 root 1 Root_unresolved Root_unresolved 60.2 1.82e-4   NTclustered gi|2917940724|emb|OZ237563.1| 6108 g37193 i0 94.737 17.6975308641975 38 2 12 0 209 246 14184306 14184343 Anemonia sulcata genome assembly, chromosome: 9 blastn 5734 60.2 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
24670626 24670626 PRJNA473201_P_NODE_74820_length_246_cov_2.658960_g74078_i0 PRJNA473201 74820 246 2.65896 6.5410416 Actinia tenebrosa 6105 Cnidaria other_Eukaryota 111 3.61e-20   NTclustered gi|1778045362|ref|XM_031704449.1| 6105 g74078 i0 87.129 16.5040650406504 101 10 40 2 148 245 1262 1162 PREDICTED: Actinia tenebrosa tubulin beta chain (LOC116296431), mRNA blastn 4060 111 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Actinia Actinia tenebrosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;