RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA473201" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA473201 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
443365 443365 PRJNA473201_P_NODE_15861_length_500_cov_2.177986_g15120_i0 PRJNA473201 15861 500 2.177986 10.88993 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 372 3.3e-98   NTclustered gi|110645063|gb|DQ665311.1| 151077 g15120 i0 81.316 56.43 471 76 93 9 36 500 1205 741 Chilodonella uncinata clone 1 elongation factor 1-alpha (EF-1alpha) gene, partial cds; macronuclear blastn 28215 372 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
444418 444418 PRJNA473201_P_NODE_72181_length_248_cov_0.880000_g71439_i0 PRJNA473201 72181 248 0.88 2.1824 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 169 2.13e-37   NTclustered gi|310871|gb|L18893.1| 5911 g71439 i0 92.373 1.72983870967742 118 9 48 0 130 247 545 428 Tetrahymena thermophila histone H2A.1 (H2A.1) gene, complete cds; macronuclear blastn 429 169 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
2994657 2994657 PRJNA473201_P_NODE_50943_length_289_cov_12.347222_g50201_i0 PRJNA473201 50943 289 12.347222 35.68347158 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|471220800|ref|XM_004027304.1| 5932 g50201 i0 100 0.100346020761246 29 0 10 0 144 172 324 352 Ichthyophthirius multifiliis ibr domain protein (IMG5_184780) mRNA, complete cds blastn 29 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
4271195 4271195 PRJNA473201_P_NODE_63064_length_258_cov_1.297297_g62322_i0 PRJNA473201 63064 258 1.297297 3.34702626 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 302 2.11e-77   NTclustered gi|110645063|gb|DQ665311.1| 151077 g62322 i0 91.031 6.81782945736434 223 20 86 0 1 223 223 1 Chilodonella uncinata clone 1 elongation factor 1-alpha (EF-1alpha) gene, partial cds; macronuclear blastn 1759 302 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
6198257 6198257 PRJNA473201_P_NODE_61285_length_263_cov_0.931579_g60543_i0 PRJNA473201 61285 263 0.931579 2.45005277 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 475 1.2e-129   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g60543 i0 99.24 89.3878326996198 263 2 100 0 1 263 2311 2049 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 23509 475 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
10648462 10648462 PRJNA473201_P_NODE_84349_length_241_cov_1.476190_g83607_i0 PRJNA473201 84349 241 1.47619 3.5576179 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 329 8.95e-86   NTclustered gi|829190650|ref|XM_001030674.2| 312017 g83607 i0 91.286 1 241 21 100 0 1 241 2541 2781 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 241 329 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
19570409 19570409 PRJNA473201_P_NODE_85076_length_241_cov_0.916667_g84334_i0 PRJNA473201 85076 241 0.916667 2.20916747 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 327 3.22e-85   NTclustered gi|229595107|ref|XM_001020023.3| 312017 g84334 i0 95.588 0.846473029045643 204 9 85 0 1 204 204 1 Tetrahymena thermophila SB210 60S ribosomal protein L21 partial mRNA blastn 204 327 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
22771473 22771473 PRJNA473201_P_NODE_23738_length_404_cov_2.123867_g22996_i0 PRJNA473201 23738 404 2.123867 8.58042268 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 647 0   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g22996 i0 95.545 95.4133663366337 404 18 100 0 1 404 28 431 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 38547 647 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;