RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA473201" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA473201 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5547178 5547178 PRJNA473201_P_NODE_24585_length_397_cov_1.666667_g23843_i0 PRJNA473201 24585 397 1.666667 6.61666799 Mesofila sp. ATCC PRA-54 439948 SAR_Eukaryotes SAR_Eukaryotes 296 1.59e-75   NTclustered gi|160337400|gb|EF455798.1| 439948 g23843 i0 84.211 81.4659949622166 304 48 77 0 1 304 767 464 Dimorpha sp. ATCC PRA-54 clone 2 actin gene, partial cds blastn 32342 296 1 Eukaryota Sar   Cercozoa     Mesofilidae Mesofila Mesofila sp. ATCC PRA-54
14472408 14472408 PRJNA473201_P_NODE_37652_length_325_cov_1.805556_g36910_i0 PRJNA473201 37652 325 1.805556 5.868057 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 549 8.879999999999997e-152   NTclustered gi|238617630|gb|FJ973394.1| 188950 g36910 i0 97.222 93.7107692307692 324 9 99 0 2 325 780 457 Bodomorpha minima strain ATCC 50339 actin (act) gene, partial cds blastn 30456 549 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
18295519 18295519 PRJNA473201_P_NODE_45635_length_302_cov_1.397380_g44893_i0 PRJNA473201 45635 302 1.39738 4.2200876 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 348 3.2e-91   NTclustered gi|300676732|gb|GQ377662.1| 188950 g44893 i0 87.417 98.9470198675497 302 38 100 0 1 302 30 331 Bodomorpha minima alpha-tubulin (Atub) gene, partial cds blastn 29882 348 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;