RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA473201" and tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 3 ✖

bioproject 1

  • PRJNA473201 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13198327 13198327 PRJNA473201_P_NODE_88291_length_203_cov_22.869231_g87549_i0 PRJNA473201 88291 203 22.869231 46.42453893 Candidatus Stammera capleta 2608262 Bacteria Bacteria 52.8 0.018   NTclustered gi|1925240937|gb|CP043993.1| 2608262 g87549 i0 84.483 0.285714285714286 58 4 27 4 56 110 4709 4764 MAG: Candidatus Stammera capleta isolate 1 chromosome, complete genome blastn 58 52.8 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
18295533 18295533 PRJNA473201_P_NODE_46635_length_299_cov_15.880531_g45893_i0 PRJNA473201 46635 299 15.880531 47.48278769 Candidatus Stammera capleta 2608262 Bacteria Bacteria 52.8 0.028   NTclustered gi|2676815317|gb|CP144796.1| 2608262 g45893 i0 100 0.0936454849498328 28 0 9 0 198 225 193399 193426 MAG: Candidatus Stammera capleta isolate IDODFKOK chromosome blastn 28 52.8 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
20845508 20845508 PRJNA473201_P_NODE_43477_length_308_cov_18.974468_g42735_i0 PRJNA473201 43477 308 18.974468 58.44136144 Candidatus Dasytiphilus stammeri 1895663 Bacteria Bacteria 54.7 0.008   NTclustered gi|2689070146|gb|CP145873.1| 1895663 g42735 i0 90.476 0.136363636363636 42 2 13 2 248 287 195434 195475 MAG: Candidatus Dasytiphilus stammeri isolate Lsp01 chromosome blastn 42 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Dasytiphilus Candidatus Dasytiphilus stammeri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;