RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA473201" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA473201 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15746704 15746704 PRJNA473201_P_NODE_52573_length_285_cov_17.165094_g51831_i0 PRJNA473201 52573 285 17.165094 48.9205179 Opitutus terrae 107709 Bacteria Bacteria 143 1.52e-29   NTclustered gi|177839040|gb|CP001032.1| 452637 g51831 i0 92.929 33.4842105263158 99 5 34 2 15 112 2052834 2052931 Opitutus terrae PB90-1, complete genome blastn 9543 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
19570412 19570412 PRJNA473201_P_NODE_85256_length_241_cov_0.916667_g84514_i0 PRJNA473201 85256 241 0.916667 2.20916747 Saltatorellus ferox 2528018 Bacteria Bacteria 145 3.48e-30   NTclustered gi|1712682957|gb|CP036434.1| 2528018 g84514 i0 80.423 58.3858921161826 189 37 78 0 31 219 3604364 3604176 Planctomycetes bacterium Poly30 chromosome, complete genome blastn 14071 145 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia     Saltatorellus Saltatorellus ferox

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;