RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA459724" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA459724 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2369355 2369355 PRJNA459724_P_NODE_5462_length_164_cov_3.044444_g5070_i0 PRJNA459724 5462 164 3.044444 4.99288816 Pirellulaceae 2691357 Bacteria Bacteria 235 1.27e-57   NTclustered gi|1712701923|gb|CP036298.1| 2527968 g5070 i0 93.21 90.7987804878049 162 7 98 4 4 163 6999548 6999707 Aureliella helgolandensis strain Q31a chromosome, complete genome blastn 14891 237 0.991561181434599 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Aureliella Aureliella helgolandensis
2993704 2993704 PRJNA459724_P_NODE_3223_length_260_cov_1.896104_g2831_i0 PRJNA459724 3223 260 1.896104 4.9298704 Anatilimnocola aggregata 2528021 Bacteria Bacteria 228 3.6699999999999994e-55   NTclustered gi|1712591889|gb|CP036274.1| 2528021 g2831 i0 82.443 58.4884615384615 262 44 100 2 1 260 7629687 7629426 Anatilimnocola aggregata strain ETA_A8 chromosome, complete genome blastn 15207 228 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Anatilimnocola Anatilimnocola aggregata
17020389 17020389 PRJNA459724_P_NODE_3054_length_272_cov_2.008230_g2663_i0 PRJNA459724 3054 272 2.00823 5.4623856 uncultured Planctomycetota bacterium 120965 Bacteria Bacteria 468 2.09e-127   NTclustered gi|576901465|gb|KF827058.1| 120965 g2663 i0 97.794 101.319852941176 272 5 100 1 1 272 621 351 Uncultured planctomycete clone B-30-43 16S ribosomal RNA gene, partial sequence blastn 27559 468 1 Bacteria PVC group Pseudomonadati Planctomycetota         uncultured Planctomycetota bacterium
18945485 18945485 PRJNA459724_P_NODE_5895_length_151_cov_2.221311_g5503_i0 PRJNA459724 5895 151 2.221311 3.35417961 Chthoniobacter 295577 Bacteria Bacteria 224 2.4699999999999993e-54   NTclustered gi|226525288|gb|FJ872373.1| 156588 g5503 i0 93.421 181.013245033113 152 8 100 2 1 151 15701 15551 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 27333 224 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;