RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA454503" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6819723 6819723 PRJNA454503_P_NODE_14106_length_306_cov_1.053061_g13777_i0 PRJNA454503 14106 306 1.053061 3.22236666 Prosthecobacter dejongeii 48465 Bacteria Bacteria 473 5.139999999999999e-129   NTclustered gi|183579826|emb|AM905423.1| 48465 g13777 i0 96.516 265.493464052288 287 8 94 2 1 287 1768 1484 Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 blastn 81241 473 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
8095894 8095894 PRJNA454503_P_NODE_69447_length_207_cov_0.890411_g69118_i0 PRJNA454503 69447 207 0.890411 1.84315077 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 56.5 0.001   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g69118 i0 100 0.144927536231884 30 0 14 0 110 139 1644999 1644970 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 30 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
8746536 8746536 PRJNA454503_P_NODE_18747_length_275_cov_1.037383_g18418_i0 PRJNA454503 18747 275 1.037383 2.85280325 Verrucomicrobiaceae 203557 Bacteria Bacteria 436 5.969999999999999e-118   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g18418 i0 95.588 260.189090909091 272 12 99 0 4 275 2182 2453 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 71552 436 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
13196508 13196508 PRJNA454503_P_NODE_8171_length_392_cov_1.178248_g7842_i0 PRJNA454503 8171 392 1.178248 4.61873216 Verrucomicrobium spinosum 2736 Bacteria Bacteria 481 4.03e-131   NTclustered gi|12583973|gb|AF245377.1| 240016 g7842 i0 88.974 237.163265306122 390 42 99 1 1 390 1042 1430 Verrucomicrobium spinosum 23S ribosomal RNA gene, partial sequence blastn 92968 481 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;