RNAquarium Metadata Server
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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA454503" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 31 ✖

analysis 1

  • blastn · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
442184 442184 PRJNA454503_P_NODE_24261_length_252_cov_1.376963_g23932_i0 PRJNA454503 24261 252 1.376963 3.46994676 Adineta vaga 104782 Rotifera other_Eukaryota 305 1.59e-78   NTclustered gi|402761739|gb|JX184001.1| 104782 g23932 i0 88.755 91.7738095238095 249 28 99 0 1 249 738 986 Adineta vaga cytochrome c oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 23127 305 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
443044 443044 PRJNA454503_P_NODE_9921_length_355_cov_1.768707_g9592_i0 PRJNA454503 9921 355 1.768707 6.27890985 Adineta ricciae 249248 Rotifera other_Eukaryota 497 3.59e-136   NTclustered gi|62362189|gb|AY942834.1| 249248 g9592 i0 94.172 0.91830985915493 326 19 92 0 30 355 487 162 Adineta ricciae amphiHMG1/2-like protein mRNA, partial cds blastn 326 497 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
1093706 1093706 PRJNA454503_P_NODE_39321_length_227_cov_3.090361_g38992_i0 PRJNA454503 39321 227 3.090361 7.01511947 Adineta 104781 Rotifera other_Eukaryota 409 1.04e-109   NTclustered gi|72153731|gb|DQ089739.1| 104782 g38992 i0 99.119 62.5198237885463 227 2 100 0 1 227 1957 2183 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 14192 409 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
1717636 1717636 PRJNA454503_P_NODE_6802_length_433_cov_7.053763_g6473_i0 PRJNA454503 6802 433 7.053763 30.54279379 Adineta vaga 104782 Rotifera other_Eukaryota 351 3.68e-92   NTclustered gi|402761723|gb|JX183993.1| 104782 g6473 i0 81.797 0.976905311778291 423 73 97 4 1 421 147 567 Adineta vaga ATP synthase F0 subunit 6 (ATP6) gene, partial cds; mitochondrial blastn 423 351 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
2368922 2368922 PRJNA454503_P_NODE_18102_length_278_cov_1.497696_g17773_i0 PRJNA454503 18102 278 1.497696 4.16359488 Opisthokonta 33154 Rotifera other_Eukaryota 508 1.26e-139   NTclustered gi|72153731|gb|DQ089739.1| 104782 g17773 i0 99.64 94.2230215827338 278 1 100 0 1 278 779 502 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 26194 508 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
2992857 2992857 PRJNA454503_P_NODE_2463_length_770_cov_2.984485_g2175_i0 PRJNA454503 2463 770 2.984485 22.9805345 Adineta vaga 104782 Rotifera other_Eukaryota 730 0   NTclustered gi|402761803|gb|JX184033.1| 104782 g2175 i0 83.912 13.3961038961039 777 111 100 12 1 770 48 817 Adineta vaga NADH dehydrogenase subunit 1 (ND1) gene, partial cds; mitochondrial blastn 10315 730 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
2993418 2993418 PRJNA454503_P_NODE_68523_length_207_cov_0.890411_g68194_i0 PRJNA454503 68523 207 0.890411 1.84315077 Adineta vaga 104782 Rotifera other_Eukaryota 257 3.5800000000000004e-64   NTclustered gi|189313895|gb|EU637017.1| 104782 g68194 i0 91.053 5.89855072463768 190 17 92 0 1 190 30430 30241 Adineta vaga glycoprotein gene, partial cds; and hypothetical proteins, DUF288 containing protein, hypothetical protein, methionine sulfoxide reductase, strabismus, S/T/Y kinase, integral membrane protein, plasma membrane calcium ATPase, myosin alkali light chain, hypothetical protein, hsp82, hypothetical protein, DUF288 containing protein, hypothetical protein, saicars, IBR containing protein, hypothetical proteins, NHL repeat containing protein, ubiquitin ligase, snf7, C2 containing protein, PKD channel, synaptotagmin, and hypothetical protein genes, complete cds blastn 1221 257 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
4269144 4269144 PRJNA454503_P_NODE_17844_length_279_cov_1.972477_g17515_i0 PRJNA454503 17844 279 1.972477 5.50321083 Adineta vaga 104782 Rotifera other_Eukaryota 381 2.8899999999999995e-101   NTclustered gi|194500447|gb|EU850438.1| 104782 g17515 i0 97.321 80.3297491039426 224 6 80 0 56 279 28325 28102 Adineta vaga hypothetical protein 18 gene, partial cds; hypothetical protein 19, coatomer, GPCR, beta-transducin repeat, speckle-type POZ, adenosine kinase, prefoldin subunit, translation initiation factor eIF-4E, rho GTPase activating protein, histone H4, histone H3, histone H2B, and histone H2Av genes, complete cds; and mitochondrial ribosomal protein s22 gene, partial cds blastn 22412 381 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
4269171 4269171 PRJNA454503_P_NODE_19464_length_271_cov_1.380952_g19135_i0 PRJNA454503 19464 271 1.380952 3.74237992 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 156 1.84e-33   NTclustered gi|1143271490|gb|KX822782.1| 104777 g19135 i0 88.148 5.00738007380074 135 11 48 5 139 269 2616 2749 Brachionus calyciflorus chromosome II mitochondrion, complete sequence blastn 1357 156 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
4269270 4269270 PRJNA454503_P_NODE_25904_length_247_cov_1.392473_g25575_i0 PRJNA454503 25904 247 1.392473 3.43940831 Adineta vaga 104782 Rotifera other_Eukaryota 329 9.21e-86   NTclustered gi|187233661|gb|EU643497.1| 104782 g25575 i0 90.688 1.92307692307692 247 23 100 0 1 247 372 618 Adineta vaga putative ribosomal protein L7 mRNA, partial cds blastn 475 329 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
8095102 8095102 PRJNA454503_P_NODE_1147_length_1098_cov_7.351977_g931_i0 PRJNA454503 1147 1098 7.351977 80.72470746 Brachionus rubens 392764 Rotifera other_Eukaryota 636 2.42e-177   NTclustered gi|632795126|gb|KJ489417.1| 392764 g931 i0 80.259 38.7805100182149 851 162 77 5 251 1098 866 19 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 42581 636 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
8096108 8096108 PRJNA454503_P_NODE_8767_length_377_cov_3.300633_g8438_i0 PRJNA454503 8767 377 3.300633 12.44338641 Philodina citrina 468664 Rotifera other_Eukaryota 368 3.14e-97   NTclustered gi|407227484|emb|FR856884.1| 468664 g8438 i0 84.675 36.0663129973475 385 41 99 13 2 377 2124 1749 Philodina citrina complete mitochondrial genome blastn 13597 368 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
8746676 8746676 PRJNA454503_P_NODE_3747_length_610_cov_21.065574_g3438_i0 PRJNA454503 3747 610 21.065574 128.5000014 Philodinida 104783 Rotifera other_Eukaryota 693 0   NTclustered gi|402761757|gb|JX184010.1| 104786 g3438 i0 87.438 50.144262295082 605 72 99 4 6 608 623 21 Habrotrocha constricta cytochrome c oxidase subunit 2 (COX2) gene, complete cds; mitochondrial blastn 30588 693 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
9370004 9370004 PRJNA454503_P_NODE_2188_length_821_cov_2.984211_g1905_i0 PRJNA454503 2188 821 2.984211 24.50037231 Brachionus rubens 392764 Rotifera other_Eukaryota 335 7.319999999999999e-87   NTclustered gi|632795126|gb|KJ489417.1| 392764 g1905 i0 74.634 4.163215590743 820 178 98 25 11 815 8421 9225 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 3418 335 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
9370599 9370599 PRJNA454503_P_NODE_7008_length_425_cov_2.535714_g6679_i0 PRJNA454503 7008 425 2.535714 10.7767845 Adineta vaga 104782 Rotifera other_Eukaryota 651 0   NTclustered gi|187233665|gb|EU643499.1| 104782 g6679 i0 95.567 0.955294117647059 406 18 96 0 20 425 1 406 Adineta vaga ribosomal protein L26 mRNA, partial cds blastn 406 651 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
10646343 10646343 PRJNA454503_P_NODE_4489_length_548_cov_6.201232_g4170_i0 PRJNA454503 4489 548 6.201232 33.98275136 Brachionus rubens 392764 Rotifera other_Eukaryota 425 2.76e-114   NTclustered gi|632795126|gb|KJ489417.1| 392764 g4170 i0 80.797 35.4306569343066 552 98 100 8 1 548 570 23 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 19416 425 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
13195708 13195708 PRJNA454503_P_NODE_17891_length_279_cov_1.477064_g17562_i0 PRJNA454503 17891 279 1.477064 4.12100856 Adineta ricciae 249248 Rotifera other_Eukaryota 403 6.16e-108   NTclustered gi|421999034|emb|HE662869.1| 249248 g17562 i0 94.636 1.32974910394265 261 12 94 1 12 272 2469 2727 Adineta ricciae alien gene expression region, clone Ar_2 blastn 371 403 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
13195838 13195838 PRJNA454503_P_NODE_2591_length_749_cov_11.300872_g2303_i0 PRJNA454503 2591 749 11.300872 84.64353128 Habrotrocha constricta 104786 Rotifera other_Eukaryota 780 0   NTclustered gi|402761773|gb|JX184018.1| 104786 g2303 i0 85.525 2.72096128170895 753 101 100 8 1 749 760 12 Habrotrocha constricta cytochrome c oxidase subunit 3 (COX3) gene, complete cds; mitochondrial blastn 2038 780 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
13196065 13196065 PRJNA454503_P_NODE_44751_length_221_cov_1.625000_g44422_i0 PRJNA454503 44751 221 1.625 3.59125 Rotaria rotatoria 231624 Rotifera other_Eukaryota 189 1.4299999999999996e-43   NTclustered gi|270267490|ref|NC_013568.1| 231624 g44422 i0 82.511 2.06787330316742 223 32 99 6 1 220 9160 9378 Rotaria rotatoria mitochondrion, complete genome blastn 457 189 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
14471309 14471309 PRJNA454503_P_NODE_5772_length_476_cov_2.578313_g5444_i0 PRJNA454503 5772 476 2.578313 12.27276988 Adineta vaga 104782 Rotifera other_Eukaryota 289 3.24e-73   NTclustered gi|187936040|gb|EU652315.1| 104782 g5444 i0 95.556 7.36974789915966 180 8 57 0 294 473 17473 17294 Adineta vaga speckle-type POZ protein gene, partial cds; and adenosine kinase, prefoldin subunit 1, translation initiation factor eIF-4E, Rho GTPase activating protein, histone H4, histone H3, histone H2B, histone H2Av, mitochondrial ribosomal protein s22, ribosomal protein s15a, hypothetical protein 20, START domain containing protein, arginine vasopressin receptor, filament protein, and nucleolar complex associated-like protein genes, complete cds blastn 3508 289 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
15744575 15744575 PRJNA454503_P_NODE_10273_length_349_cov_8.083333_g9944_i0 PRJNA454503 10273 349 8.083333 28.21083217 Macrotrachela quadricornifera 104788 Rotifera other_Eukaryota 281 3.86e-71   NTclustered gi|402761877|gb|JX184070.1| 104788 g9944 i0 81.686 3.94269340974212 344 57 98 5 4 344 268 608 Macrotrachela quadricornifera isolate MM NADH dehydrogenase subunit 5 (ND5) gene, complete cds; mitochondrial blastn 1376 281 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Macrotrachela Macrotrachela quadricornifera
17019316 17019316 PRJNA454503_P_NODE_12634_length_319_cov_1.821705_g12305_i0 PRJNA454503 12634 319 1.821705 5.81123895 Adineta ricciae 249248 Rotifera other_Eukaryota 573 5.159999999999998e-159   NTclustered gi|62362195|gb|AY942837.1| 249248 g12305 i0 99.06 1 319 3 100 0 1 319 468 150 Adineta ricciae ribosomal protein S7-like protein mRNA, complete cds blastn 319 573 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae
17019922 17019922 PRJNA454503_P_NODE_514_length_1518_cov_6.759780_g365_i0 PRJNA454503 514 1518 6.75978 102.6134604 Brachionus rubens 392764 Rotifera other_Eukaryota 1334 0   NTclustered gi|632795131|gb|KJ489418.1| 392764 g365 i0 82.554 52.3530961791831 1519 261 99 4 2 1518 22 1538 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 79472 1334 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
17671203 17671203 PRJNA454503_P_NODE_2414_length_779_cov_59.179666_g2126_i0 PRJNA454503 2414 779 59.179666 461.00959814 Philodinidae 44580 Rotifera other_Eukaryota 785 0   NTclustered gi|270267490|ref|NC_013568.1| 231624 g2126 i0 85.347 17.808729139923 778 92 99 22 8 776 1659 2423 Rotaria rotatoria mitochondrion, complete genome blastn 13873 791 0.992414664981037 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
19567883 19567883 PRJNA454503_P_NODE_18536_length_276_cov_1.209302_g18207_i0 PRJNA454503 18536 276 1.209302 3.33767352 Habrotrocha constricta 104786 Rotifera other_Eukaryota 355 1.73e-93   NTclustered gi|402761741|gb|JX184002.1| 104786 g18207 i0 89.855 97.7355072463768 276 28 100 0 1 276 815 1090 Habrotrocha constricta cytochrome c oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 26975 355 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
20219720 20219720 PRJNA454503_P_NODE_14516_length_302_cov_1.618257_g14187_i0 PRJNA454503 14516 302 1.618257 4.88713614 Adineta 104781 Rotifera other_Eukaryota 553 6.32e-153   NTclustered gi|2537903787|gb|KM043252.2| 104782 g14187 i0 99.669 99.9635761589404 302 1 100 0 1 302 845 544 Adineta vaga voucher AD005 18S ribosomal RNA gene, partial sequence blastn 30189 553 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
20843702 20843702 PRJNA454503_P_NODE_1337_length_1026_cov_5.246632_g1106_i0 PRJNA454503 1337 1026 5.246632 53.83044432 Philodina citrina 468664 Rotifera other_Eukaryota 723 0   NTclustered gi|407227484|emb|FR856884.1| 468664 g1106 i0 88.052 15.4103313840156 611 71 59 2 417 1026 5419 4810 Philodina citrina complete mitochondrial genome blastn 15811 723 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
20843945 20843945 PRJNA454503_P_NODE_2857_length_712_cov_1.202765_g2564_i0 PRJNA454503 2857 712 1.202765 8.5636868 Philodina roseola 96448 Rotifera other_Eukaryota 913 0   NTclustered gi|183178937|gb|EU432547.1| 96448 g2564 i0 89.79 77.435393258427 715 70 100 1 1 712 29863 30577 Philodina roseola TAR protein gene, partial cds; U1-like Zn-finger-containing protein (U1Zn_1), unknown (PruORF0001_1), unknown (PrPCG0001_1), methione sulfide reductase B (MSRB_1), Strabismus, serine-threonin kinase copy 1, plasma membrane calcium-dependent ATPase (CAse_1), myosin essential light chain (MELC_1), and 82 kDa heat shock protein (hsp82_1) genes, complete cds; FBoxLRR_1 gene, complete sequence; and TPRA_1 (TPRA_1) gene, complete cds blastn 55134 913 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
20844233 20844233 PRJNA454503_P_NODE_517_length_1515_cov_11.115543_g368_i0 PRJNA454503 517 1515 11.115543 168.40047645 Asplanchna sp. 3231738 Rotifera other_Eukaryota 1205 0   NTclustered gi|2778092484|gb|PP988072.1| 3231738 g368 i0 81.192 52.4085808580858 1510 272 99 10 10 1510 25 1531 Asplanchna sp. chromosome II mitochondrion, complete sequence blastn 79399 1205 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.
23394855 23394855 PRJNA454503_P_NODE_579_length_1458_cov_10.612026_g419_i0 PRJNA454503 579 1458 10.612026 154.72333908 Brachionus rubens 392764 Rotifera other_Eukaryota 664 0   NTclustered gi|632795131|gb|KJ489418.1| 392764 g419 i0 75.254 13.8422496570645 1479 323 99 37 4 1458 7060 5601 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 20182 664 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
24668528 24668528 PRJNA454503_P_NODE_3700_length_613_cov_9.934783_g3391_i0 PRJNA454503 3700 613 9.934783 60.90021979 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 237 1.56e-57   NTclustered gi|1800329609|gb|MN417951.1| 104777 g3391 i0 77.59 5.84176182707994 415 77 67 14 31 438 10240 9835 Brachionus calyciflorus chromosome I mitochondrion, complete sequence blastn 3581 237 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;