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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA454503" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2992923 2992923 PRJNA454503_P_NODE_2903_length_704_cov_4.617418_g2609_i0 PRJNA454503 2903 704 4.617418 32.50662272 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 1205 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g2609 i0 97.589 100.026988636364 705 13 100 4 1 704 716 15 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 70419 1205 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
4269855 4269855 PRJNA454503_P_NODE_78364_length_204_cov_0.909091_g78035_i0 PRJNA454503 78364 204 0.909091 1.85454564 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 141 3.69e-29   NTclustered gi|675204844|ref|XM_008913059.1| 761204 g78035 i0 84.932 1.40686274509804 146 15 72 4 2 147 537 675 Phytophthora parasitica INRA-310 ribosomal protein S4 mRNA blastn 287 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
8095358 8095358 PRJNA454503_P_NODE_26747_length_244_cov_2.114754_g26418_i0 PRJNA454503 26747 244 2.114754 5.15999976 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 117 7.6900000000000005e-22   NTclustered gi|189084883|gb|BT032414.1| 4784 g26418 i0 83.594 0.524590163934426 128 17 51 2 3 127 671 797 Phytophthora capsici clone CBOU93-B03 mRNA sequence blastn 128 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
8746597 8746597 PRJNA454503_P_NODE_26467_length_245_cov_1.413043_g26138_i0 PRJNA454503 26467 245 1.413043 3.46195535 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 278 3.35e-70   NTclustered gi|695412177|ref|XM_009527379.1| 67593 g26138 i0 87.243 7.08163265306122 243 31 99 0 1 243 260 18 Phytophthora sojae hypothetical protein mRNA blastn 1735 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
10021834 10021834 PRJNA454503_P_NODE_26028_length_246_cov_3.178378_g25699_i0 PRJNA454503 26028 246 3.178378 7.81880988 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 220 5.76e-53   NTclustered gi|813144478|ref|XM_012344373.1| 695850 g25699 i0 87.435 10.1260162601626 191 24 78 0 1 191 489 679 Saprolegnia parasitica CBS 223.65 60S ribosomal protein mRNA blastn 2491 220 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
14470664 14470664 PRJNA454503_P_NODE_12752_length_318_cov_1.494163_g12423_i0 PRJNA454503 12752 318 1.494163 4.75143834 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 167 1.02e-36   NTclustered gi|813118806|ref|XM_012340678.1| 695850 g12423 i0 90.476 1.16037735849057 126 12 40 0 193 318 354 229 Saprolegnia parasitica CBS 223.65 50S ribosomal protein L36e mRNA blastn 369 167 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
17019385 17019385 PRJNA454503_P_NODE_16374_length_288_cov_2.035242_g16045_i0 PRJNA454503 16374 288 2.035242 5.86149696 Pythium sp. AP 378252 SAR_Eukaryotes SAR_Eukaryotes 442 1.3499999999999993e-119   NTclustered gi|90855438|dbj|AB254193.1| 378252 g16045 i0 95.956 71.6666666666667 272 11 94 0 17 288 1 272 Pythium sp. AP genes for 28S rRNA, IGS, 5S rRNA, partial and complete sequence, strain: AP-1, AP-2 and AP-3 blastn 20640 442 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. AP
19568656 19568656 PRJNA454503_P_NODE_796_length_1287_cov_15.225122_g605_i0 PRJNA454503 796 1287 15.225122 195.94732014 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 2244 0   NTclustered gi|937408816|ref|NC_027966.1| 114742 g605 i0 98.135 103.869463869464 1287 24 100 0 1 1287 11293 10007 Pythium insidiosum mitochondrial DNA, complete genome blastn 133680 2244 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
20844574 20844574 PRJNA454503_P_NODE_81317_length_203_cov_0.915493_g80988_i0 PRJNA454503 81317 203 0.915493 1.85845079 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 272 1.25e-68   NTclustered gi|695405971|ref|XM_009525682.1| 67593 g80988 i0 92.593 78.7241379310345 189 14 93 0 13 201 446 258 Phytophthora sojae hypothetical protein mRNA blastn 15981 272 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
20844667 20844667 PRJNA454503_P_NODE_89477_length_190_cov_3.023256_g89148_i0 PRJNA454503 89477 190 3.023256 5.7441864 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 351 1.4399999999999997e-92   NTclustered gi|338798212|gb|HQ665273.1| 114742 g89148 i0 100 100.147368421053 190 0 100 0 1 190 801 990 Pythium insidiosum isolate CBS 574.85 28S large subunit ribosomal RNA gene, partial sequence blastn 19028 351 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
23395076 23395076 PRJNA454503_P_NODE_7759_length_404_cov_1.137026_g7430_i0 PRJNA454503 7759 404 1.137026 4.59358504 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 198 4.7e-46   NTclustered gi|695460914|ref|XM_009539807.1| 67593 g7430 i0 91.608 35.7772277227723 143 12 35 0 1 143 212 354 Phytophthora sojae hypothetical protein mRNA blastn 14454 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;