RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA454503" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA454503 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8095759 8095759 PRJNA454503_P_NODE_56567_length_211_cov_0.866667_g56238_i0 PRJNA454503 56567 211 0.866667 1.82866737 Nitrospira sp. 70125 Bacteria Bacteria 183 6.3e-42   NTclustered gi|2194436381|gb|CP092080.1| 70125 g56238 i0 82.775 0.990521327014218 209 33 98 2 1 206 225945 226153 MAG: Nitrospira sp. isolate UBC1 chromosome blastn 209 183 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
13196544 13196544 PRJNA454503_P_NODE_85391_length_202_cov_0.921986_g85062_i0 PRJNA454503 85391 202 0.921986 1.86241172 Nitrospira sp. 70125 Bacteria Bacteria 183 5.979999999999998e-42   NTclustered gi|2290907019|gb|CP060499.1| 70125 g85062 i0 83.333 128.316831683168 204 29 100 5 1 202 2684758 2684958 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 25920 183 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
15745267 15745267 PRJNA454503_P_NODE_59233_length_210_cov_0.872483_g58904_i0 PRJNA454503 59233 210 0.872483 1.8322143 Nitrospira sp. 70125 Bacteria Bacteria 183 6.259999999999998e-42   NTclustered gi|2863129529|dbj|AP038806.1| 70125 g58904 i0 82.381 1 210 37 100 0 1 210 2296351 2296560 MAG: Nitrospira sp. NFB02 DNA, complete genome blastn 210 183 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;