RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA454503" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2993209 2993209 PRJNA454503_P_NODE_50723_length_215_cov_1.266234_g50394_i0 PRJNA454503 50723 215 1.266234 2.7224031 Micoletzkya masseyi 1250333 Nematoda Nematoda 148 2.35e-31   NTclustered gi|410992313|gb|JX163985.1| 1250333 g50394 i0 81.667 2.49302325581395 180 31 83 2 4 182 188 10 Micoletzkya masseyi large subunit ribosomal protein 9 (rpl-9) mRNA, partial cds blastn 536 148 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Micoletzkya Micoletzkya masseyi
18293692 18293692 PRJNA454503_P_NODE_14075_length_306_cov_1.379592_g13746_i0 PRJNA454503 14075 306 1.379592 4.22155152 Strongyloides ratti 34506 Nematoda Nematoda 220 7.39e-53   NTclustered gi|1376152387|ref|XM_024644732.1| 34506 g13746 i0 79.933 7.61437908496732 299 60 98 0 8 306 428 130 Strongyloides ratti Peptidyl-prolyl cis-trans isomerase B (SRAE_X000039200), partial mRNA blastn 2330 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;