RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA454503" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9370597 9370597 PRJNA454503_P_NODE_69928_length_206_cov_1.793103_g69599_i0 PRJNA454503 69928 206 1.793103 3.69379218 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 137 4.83e-28   NTclustered gi|575456455|gb|CP007128.1| 861299 g69599 i0 83.916 2.44174757281553 143 23 69 0 60 202 2293467 2293325 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 503 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
17020249 17020249 PRJNA454503_P_NODE_80414_length_203_cov_1.767606_g80085_i0 PRJNA454503 80414 203 1.767606 3.58824018 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 291 3.44e-74   NTclustered gi|575456455|gb|CP007128.1| 861299 g80085 i0 94.709 15.2463054187192 189 6 92 4 1 186 3043406 3043219 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 3095 291 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
24668314 24668314 PRJNA454503_P_NODE_20800_length_265_cov_0.965686_g20471_i0 PRJNA454503 20800 265 0.965686 2.5590679 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 370 5.89e-98   NTclustered gi|2874253978|emb|OY970303.1| 412054 g20471 i0 92.664 230.581132075472 259 15 97 4 1 257 1904489 1904745 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 61104 370 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;