RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA454503" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA454503 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15744702 15744702 PRJNA454503_P_NODE_16313_length_289_cov_1.135965_g15984_i0 PRJNA454503 16313 289 1.135965 3.28293885 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 213 1.16e-50   NTclustered gi|2814788337|emb|OY760908.2| 2026734 g15984 i0 80.479 131.515570934256 292 45 99 9 2 289 1155805 1155522 MAG: Dehalococcoidia bacterium isolate 99511b8e-fdeb-40b8-a9fc-769d5cc020c2 genome assembly, chromosome: 1 blastn 38008 213 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
17020209 17020209 PRJNA454503_P_NODE_76834_length_204_cov_1.818182_g76505_i0 PRJNA454503 76834 204 1.818182 3.70909128 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 196 7.77e-46   NTclustered gi|2874254102|emb|OY970185.1| 1672391 g76505 i0 84.236 1.13235294117647 203 30 99 2 3 204 785010 784809 MAG: uncultured Chloroflexia bacterium isolate MFD06435.bin.c.3 genome assembly, chromosome: 1 blastn 231 196 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
23395223 23395223 PRJNA454503_P_NODE_90399_length_177_cov_4.982759_g90070_i0 PRJNA454503 90399 177 4.982759 8.81948343 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 110 8.75e-20   NTclustered gi|2893358404|emb|OZ220695.1| 3022862 g90070 i0 86.735 0.553672316384181 98 13 55 0 68 165 1121660 1121757 MAG: Tepidiformaceae bacterium isolate d5d77930-af5a-4506-8b4e-3340c6a42e1f genome assembly, chromosome: 1 blastn 98 110 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;