contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA454503" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4269419 | 4269419 | PRJNA454503_P_NODE_37704_length_229_cov_2.321429_g37375_i0 | PRJNA454503 | 37704 | 229 | 2.321429 | 5.31607241 | Arcobacter sp. 15-2 | 3374109 | Bacteria | Bacteria | 379 | 8.249999999999999e-101 | NTclustered | gi|2862971141|dbj|AP038804.1| | 3374109 | g37375 | i0 | 96.507 | 245.864628820961 | 229 | 8 | 100 | 0 | 1 | 229 | 342180 | 341952 | Arcobacter sp. 15-2 DNA, complete genome | blastn | 56303 | 379 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Arcobacteraceae | Arcobacter | Arcobacter sp. 15-2 | ||
| 16396287 | 16396287 | PRJNA454503_P_NODE_45353_length_220_cov_2.823899_g45024_i0 | PRJNA454503 | 45353 | 220 | 2.823899 | 6.2125778 | Arcobacteraceae | 2808963 | Bacteria | Bacteria | 398 | 2.1699999999999996e-106 | NTclustered | gi|1231709647|emb|LT906455.1| | 28197 | g45024 | i0 | 99.541 | 368.090909090909 | 218 | 1 | 99 | 0 | 3 | 220 | 851612 | 851829 | Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1 | blastn | 80980 | 401 | 0.992518703241895 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Arcobacteraceae | Aliarcobacter | Aliarcobacter butzleri | ||
| 18294626 | 18294626 | PRJNA454503_P_NODE_89995_length_190_cov_2.015504_g89666_i0 | PRJNA454503 | 89995 | 190 | 2.015504 | 3.8294576 | Campylobacter concisus | 199 | Bacteria | Bacteria | 324 | 3.13e-84 | NTclustered | gi|2700477995|gb|CP147775.1| | 199 | g89666 | i0 | 97.368 | 12 | 190 | 5 | 100 | 0 | 1 | 190 | 1055391 | 1055580 | Campylobacter concisus strain RMIT-O23 chromosome | blastn | 2280 | 324 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter concisus | ||
| 20220136 | 20220136 | PRJNA454503_P_NODE_7436_length_413_cov_0.909091_g7107_i0 | PRJNA454503 | 7436 | 413 | 0.909091 | 3.75454583 | Arcobacter | 28196 | Bacteria | Bacteria | 669 | 0 | NTclustered | gi|2907625684|emb|OZ223244.1| | 2808971 | g7107 | i0 | 96.107 | 401.796610169492 | 411 | 14 | 99 | 2 | 1 | 411 | 470249 | 469841 | MAG: Arcobacteraceae bacterium isolate d8a8449e-00d2-4365-b2ae-71d708214a40 genome assembly, chromosome: 5 | blastn | 165942 | 669 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Arcobacteraceae | Arcobacteraceae bacterium | |||
| 22119013 | 22119013 | PRJNA454503_P_NODE_45158_length_221_cov_1.312500_g44829_i0 | PRJNA454503 | 45158 | 221 | 1.3125 | 2.900625 | Campylobacter showae | 204 | Bacteria | Bacteria | 315 | 2.26e-81 | NTclustered | gi|1483583495|emb|LT631419.1| | 204 | g44829 | i0 | 92.308 | 7.76018099547511 | 221 | 17 | 100 | 0 | 1 | 221 | 222706 | 222926 | Campylobacter showae genome assembly, chromosome: I | blastn | 1715 | 315 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter showae |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;