RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA454154" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA454154 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20843643 20843643 PRJNA454154_S_NODE_277_length_201_cov_13.359756_g274_i0 PRJNA454154 277 201 13.359756 26.85310956 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 350 5.539999999999999e-92   NTclustered gi|54306228|gb|AY626163.1| 297386 g274 i0 98.01 81.4577114427861 201 4 100 0 1 201 777 977 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 16373 350 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
25319660 25319660 PRJNA454154_S_NODE_40_length_374_cov_32.397626_g37_i0 PRJNA454154 40 374 32.397626 121.16712124 Tubulinea 555369 Tubulinea other_Eukaryota 409 1.83e-109   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g37 i0 91.837 77.7459893048128 294 22 79 1 57 350 868 1159 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 29077 409 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;