RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA454154" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA454154 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
441962 441962 PRJNA454154_S_NODE_641_length_153_cov_2.155172_g638_i0 PRJNA454154 641 153 2.155172 3.29741316 Dictyostelium discoideum 44689 Evosea other_Eukaryota 172 9.22e-39   NTclustered gi|66806156|ref|XM_631708.1| 352472 g638 i0 87.333 4.52287581699346 150 19 98 0 4 153 660 809 Dictyostelium discoideum AX4 vitamin B6 biosynthesis family protein (DDB_G0288299) mRNA, complete cds blastn 692 172 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
11920751 11920751 PRJNA454154_S_NODE_90_length_291_cov_21.366142_g87_i0 PRJNA454154 90 291 21.366142 62.17547322 Filamoeba nolandi 136452 Evosea other_Eukaryota 534 2.1999999999999998e-147   NTclustered gi|57546814|gb|AY714368.1| 136452 g87 i0 100 79.1477663230241 289 0 99 0 3 291 122 410 Filamoeba nolandi strain CCAP1526 small subunit ribosomal RNA gene, complete sequence blastn 23032 534 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba nolandi
13195561 13195561 PRJNA454154_S_NODE_31_length_401_cov_35.472527_g28_i0 PRJNA454154 31 401 35.472527 142.24483327 Filamoeba nolandi 136452 Evosea other_Eukaryota 702 0   NTclustered gi|57546814|gb|AY714368.1| 136452 g28 i0 98.259 75.6034912718204 402 6 100 1 1 401 990 589 Filamoeba nolandi strain CCAP1526 small subunit ribosomal RNA gene, complete sequence blastn 30317 702 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba nolandi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;