RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA454154" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA454154 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1093464 1093464 PRJNA454154_S_NODE_61_length_343_cov_85.529412_g58_i0 PRJNA454154 61 343 85.529412 293.36588316 Sessilida 1974272 SAR_Eukaryotes SAR_Eukaryotes 590 5.56e-164   NTclustered gi|512134943|gb|JX178902.1| 1295638 g58 i0 97.668 98.997084548105 343 8 100 0 1 343 1402 1060 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 33956 590 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
13847005 13847005 PRJNA454154_S_NODE_271_length_202_cov_10.387879_g268_i0 PRJNA454154 271 202 10.387879 20.98351558 Sessilida 1974272 SAR_Eukaryotes SAR_Eukaryotes 335 1.5599999999999993e-87   NTclustered gi|363412153|gb|JN120227.1| 60850 g268 i0 100 89.6039603960396 181 0 90 0 7 187 620 800 Vorticella convallaria isolate 96Vorsp16 18S ribosomal RNA gene, partial sequence blastn 18100 335 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella convallaria
24668136 24668136 PRJNA454154_S_NODE_440_length_177_cov_2.685714_g437_i0 PRJNA454154 440 177 2.685714 4.75371378 Bakuella subtropica 1295181 SAR_Eukaryotes SAR_Eukaryotes 121 4.039999999999999e-23   NTclustered gi|2468680567|ref|NC_072596.1| 1295181 g437 i0 81.457 11.0847457627119 151 24 84 4 30 177 45124 44975 Bakuella subtropica mitochondrion, complete genome blastn 1962 121 1 Eukaryota Sar   Ciliophora Spirotrichea Urostylida Bakuellidae Bakuella Bakuella subtropica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;