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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA454154" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454154 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6196472 6196472 PRJNA454154_S_NODE_445_length_176_cov_9.712230_g442_i0 PRJNA454154 445 176 9.71223 17.0935248 Eukaryota 2759 Fungi Fungi 213 6.44e-51   NTclustered gi|311235598|ref|NG_027613.1| 110093 g442 i0 91.558 101.534090909091 154 13 88 0 4 157 2694 2847 Polychytrium aggregatum JEL 109 28S rRNA gene, partial sequence; from reference material blastn 17870 213 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
6819641 6819641 PRJNA454154_S_NODE_106_length_279_cov_10.454545_g103_i0 PRJNA454154 106 279 10.454545 29.16818055 Gaertneriomyces semiglobifer 109897 Fungi Fungi 183 8.73e-42   NTclustered gi|82398216|gb|DQ273778.1| 109897 g103 i0 94.872 42.2903225806452 117 6 42 0 163 279 2165 2281 Gaertneriomyces semiglobiferus isolate AFTOL-ID 34 28S ribosomal RNA gene, partial sequence blastn 11799 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
15744565 15744565 PRJNA454154_S_NODE_513_length_166_cov_14.643411_g510_i0 PRJNA454154 513 166 14.643411 24.30806226 Lobulomycetales sp. 2058121 Fungi Fungi 97.1 6.33e-16   NTclustered gi|2468791005|gb|OQ702918.1| 2058121 g510 i0 93.846 27.7951807228916 65 3 39 1 102 165 3925 3989 Lobulomycetales sp. isolate PSC233 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4614 97.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
15744567 15744567 PRJNA454154_S_NODE_93_length_289_cov_31.694444_g90_i0 PRJNA454154 93 289 31.694444 91.59694316 Synchytrium sp. 1971732 Fungi Fungi 93.5 1.58e-14   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g90 i0 83.168 0.349480968858132 101 17 35 0 45 145 1006 906 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 101 93.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.
16396025 16396025 PRJNA454154_S_NODE_33_length_396_cov_28.097493_g30_i0 PRJNA454154 33 396 28.097493 111.26607228 Staurastromyces 2006669 Fungi Fungi 108 7.98e-19   NTclustered gi|2465121858|gb|OQ687259.1| 687209 g30 i0 81.618 35.0505050505051 136 20 34 4 263 396 405 537 Uncultured Rhizophydiales isolate UMPB-1297 small subunit ribosomal RNA gene, partial sequence blastn 13880 108 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
18944918 18944918 PRJNA454154_S_NODE_15_length_467_cov_48.109302_g12_i0 PRJNA454154 15 467 48.109302 224.67044034 Nowakowskiella 109880 Fungi Fungi 154 1.2099999999999999e-32   NTclustered gi|194241380|gb|EU828507.1| 546781 g12 i0 96.774 18.7194860813704 93 2 20 1 374 466 308 217 Nowakowskiella sp. JH FR 28S large subunit ribosomal RNA gene, partial sequence blastn 8742 154 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JH FR

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;