RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA454154" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 7 ✖

bioproject 1

  • PRJNA454154 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6819644 6819644 PRJNA454154_S_NODE_246_length_209_cov_3.930233_g243_i0 PRJNA454154 246 209 3.930233 8.21418697 Vicia villosa 3911 Plants Plants 115 2.3e-21   NTclustered gi|2563789913|ref|XM_058916908.1| 3911 g243 i0 84.483 2.11961722488038 116 18 56 0 47 162 263 148 PREDICTED: Vicia villosa small ribosomal subunit protein eS30z/eS30y/eS30x (LOC131646989), mRNA blastn 443 115 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vicia Vicia villosa
11296581 11296581 PRJNA454154_S_NODE_329_length_192_cov_4.819355_g326_i0 PRJNA454154 329 192 4.819355 9.2531616 Choricystis 41299 Plants Plants 62.1 2.75e-5   NTclustered gi|2724824343|gb|PP746557.1| 41300 g326 i0 84.615 3.25520833333333 65 7 33 3 118 181 26244 26182 Choricystis parasitica culture SAG:17.98 mitochondrion, complete genome blastn 625 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Choricystis Choricystis parasitica
12572283 12572283 PRJNA454154_S_NODE_30_length_406_cov_8.105691_g27_i0 PRJNA454154 30 406 8.105691 32.90910546 Eukaryota 2759 Plants Plants 649 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g27 i0 100 86.1379310344828 351 0 86 0 54 404 872 522 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 34972 649 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
12572285 12572285 PRJNA454154_S_NODE_490_length_170_cov_3.037594_g487_i0 PRJNA454154 490 170 3.037594 5.1639098 Magnoliopsida 3398 Plants Plants 141 2.95e-29   NTclustered gi|1117477653|ref|XM_019570971.1| 3871 g487 i0 84.932 55.8176470588235 146 14 84 6 26 167 551 410 PREDICTED: Lupinus angustifolius 40S ribosomal protein S23 (LOC109334968), mRNA blastn 9489 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lupinus Lupinus angustifolius
18944922 18944922 PRJNA454154_S_NODE_55_length_351_cov_22.261146_g52_i0 PRJNA454154 55 351 22.261146 78.13662246 Streptophyta 35493 Plants Plants 231 3.97e-56   NTclustered gi|1878849191|gb|MT796534.1| 3289 g52 i0 91.765 48.4330484330484 170 8 48 4 4 173 2717 2880 Dryopteris filix-mas isolate DM497 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 17000 231 1 Eukaryota Embryophyta Viridiplantae Streptophyta Polypodiopsida Polypodiales Dryopteridaceae Dryopteris Dryopteris filix-mas
20843642 20843642 PRJNA454154_S_NODE_217_length_219_cov_11.934066_g214_i0 PRJNA454154 217 219 11.934066 26.13560454 Andrographis paniculata 175694 Plants Plants 156 1.44e-33   NTclustered gi|2320600742|ref|XM_051287597.1| 175694 g214 i0 86.957 17.4520547945205 138 18 63 0 67 204 550 413 PREDICTED: Andrographis paniculata 60S ribosomal protein L23-like (LOC127259975), mRNA blastn 3822 156 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Acanthaceae Andrographis Andrographis paniculata
22770389 22770389 PRJNA454154_S_NODE_478_length_171_cov_3.529851_g475_i0 PRJNA454154 478 171 3.529851 6.03604521 Eukaryota 2759 Plants Plants 239 1.02e-58   NTclustered gi|388505617|gb|BT141081.1| 34305 g475 i0 91.86 65.4561403508772 172 12 100 2 1 171 153 323 Lotus japonicus clone JCVI-FLLj-20H3 unknown mRNA blastn 11193 241 0.991701244813278 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lotus Lotus japonicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;