RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA454154" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA454154 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6819645 6819645 PRJNA454154_S_NODE_346_length_190_cov_3.888889_g343_i0 PRJNA454154 346 190 3.888889 7.3888891 Neobodo sp. 2815825 Euglenozoa other_Eukaryota 296 6.83e-76   NTclustered gi|2428895966|gb|OQ282859.1| 2815825 g343 i0 99.387 66.7210526315789 163 1 86 0 1 163 69 231 Neobodo sp. voucher ASV10 small subunit ribosomal RNA gene, partial sequence blastn 12677 296 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo sp.
12572286 12572286 PRJNA454154_S_NODE_50_length_359_cov_2.695652_g47_i0 PRJNA454154 50 359 2.695652 9.67739068 Leishmania 5658 Euglenozoa other_Eukaryota 401 2.929999999999999e-107   NTclustered gi|2593250474|emb|OY748421.1| 5660 g47 i0 88.427 123.462395543175 337 34 92 5 22 353 990114 989778 Leishmania braziliensis isolate MHOM/BR/75/M2904 genome assembly, chromosome: 27 blastn 44323 401 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
22118459 22118459 PRJNA454154_S_NODE_18_length_454_cov_58.851319_g15_i0 PRJNA454154 18 454 58.851319 267.18498826 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 833 0   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g15 i0 99.78 20.2334801762115 454 1 100 0 1 454 568 1021 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 9186 833 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;