RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453567 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6819545 6819545 PRJNA453567_P_NODE_28966_length_163_cov_1.222222_g28729_i0 PRJNA453567 28966 163 1.222222 1.99222186 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 99 1.72e-16   NTclustered gi|2874254065|emb|OY970130.1| 412056 g28729 i0 83.186 64.7791411042945 113 13 67 6 4 113 4564802 4564911 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 10559 99 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
8094934 8094934 PRJNA453567_P_NODE_19587_length_200_cov_1.435583_g19350_i0 PRJNA453567 19587 200 1.435583 2.871166 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 100 6.12e-17   NTclustered gi|2874254096|emb|OY970179.1| 412056 g19350 i0 88.095 34.79 84 10 42 0 101 184 1643070 1643153 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 6958 100 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;