RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453567 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2992575 2992575 PRJNA453567_P_NODE_6563_length_388_cov_1.723647_g6327_i0 PRJNA453567 6563 388 1.723647 6.68775036 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 52.8 0.037   NTclustered gi|2874254106|emb|OY970189.1| 100233 g6327 i0 100 0.0721649484536082 28 0 7 0 81 108 6220670 6220697 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
9369648 9369648 PRJNA453567_P_NODE_15388_length_230_cov_1.497409_g15151_i0 PRJNA453567 15388 230 1.497409 3.4440407 Aquisphaera giovannonii 406548 Bacteria Bacteria 58.4 4.41e-4   NTclustered gi|1730068067|gb|CP042997.1| 406548 g15151 i0 100 0.260869565217391 31 0 13 0 77 107 9234949 9234919 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 60 58.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii
11920695 11920695 PRJNA453567_P_NODE_410_length_1652_cov_3.380186_g373_i0 PRJNA453567 410 1652 3.380186 55.84067272 Urbifossiella limnaea 2528023 Bacteria Bacteria 54.7 0.047   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g373 i0 100 0.0175544794188862 29 0 2 0 1480 1508 6801386 6801358 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
19567660 19567660 PRJNA453567_P_NODE_27376_length_167_cov_1.800000_g27139_i0 PRJNA453567 27376 167 1.8 3.006 Phycisphaeraceae bacterium D3-23 3004190 Bacteria Bacteria 78.7 2.31e-10   NTclustered gi|2727577647|gb|CP114179.1| 3004190 g27139 i0 86.301 0.437125748502994 73 8 43 2 1 72 1008727 1008798 Phycisphaeraceae bacterium D3-23 chromosome, complete genome blastn 73 78.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium D3-23

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;