RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453567 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9369647 9369647 PRJNA453567_P_NODE_15348_length_230_cov_2.222798_g15111_i0 PRJNA453567 15348 230 2.222798 5.1124354 Natribaculum longum 1419051 Archaea Archaea 52.8 0.021   NTclustered gi|2224381017|gb|CP095394.1| 1419051 g15111 i0 100 0.121739130434783 28 0 12 0 142 169 697637 697664 Natribaculum longum strain TRM20345 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natribaculum Natribaculum longum
10645803 10645803 PRJNA453567_P_NODE_7369_length_362_cov_1.200000_g7132_i0 PRJNA453567 7369 362 1.2 4.344 Halorarum halobium 3075121 Archaea Archaea 52.8 0.034   NTclustered gi|2582069231|gb|CP134949.1| 3075121 g7132 i0 92.105 0.104972375690608 38 2 10 1 130 166 2093780 2093743 Halobaculum sp. XH14 chromosome, complete genome blastn 38 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorarum Halorarum halobium
14470556 14470556 PRJNA453567_P_NODE_3572_length_571_cov_1.228464_g3346_i0 PRJNA453567 3572 571 1.228464 7.01452944 Halosegnis marinus 3034023 Archaea Archaea 60.2 3.37e-4   NTclustered gi|2463595543|gb|CP119802.1| 3034023 g3346 i0 87.273 0.0963222416812609 55 3 9 3 223 274 1803600 1803653 Halosegnis marinus strain DT85 chromosome, complete genome blastn 55 60.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Halosegnis Halosegnis marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;