RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA453567 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6819470 6819470 PRJNA453567_P_NODE_16426_length_221_cov_1.945652_g16189_i0 PRJNA453567 16426 221 1.945652 4.29989092 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 276 1.07e-69   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g16189 i0 89.767 33.2443438914027 215 22 97 0 6 220 5563 5777 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 7347 276 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7471377 7471377 PRJNA453567_P_NODE_3946_length_536_cov_84.513026_g3715_i0 PRJNA453567 3946 536 84.513026 452.98981936 Vannellidae 95227 Discosea other_Eukaryota 813 0   NTclustered gi|62865947|gb|AY929922.1| 325065 g3715 i0 94.413 99.9533582089552 537 17 100 11 1 536 1682 1158 Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence blastn 53575 813 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain CAZ7/I
8094925 8094925 PRJNA453567_P_NODE_18527_length_206_cov_2.502959_g18290_i0 PRJNA453567 18527 206 2.502959 5.15609554 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 292 9.75e-75   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g18290 i0 92.271 75.747572815534 207 14 100 2 1 206 452 247 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 15604 292 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa
9369729 9369729 PRJNA453567_P_NODE_2988_length_636_cov_2.268781_g2784_i0 PRJNA453567 2988 636 2.268781 14.42944716 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 544 8.549999999999998e-150   NTclustered gi|470484649|ref|XM_004344039.1| 1257118 g2784 i0 82.188 79.6981132075472 640 106 100 7 1 636 6408 5773 Acanthamoeba castellanii str. Neff PremRNA processing splicing factor 8, putative (ACA1_054320), partial mRNA blastn 50688 544 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10645608 10645608 PRJNA453567_P_NODE_12449_length_262_cov_1.124444_g12212_i0 PRJNA453567 12449 262 1.124444 2.94604328 Cochliopodium minus 313997 Discosea other_Eukaryota 267 7.84e-67   NTclustered gi|1914009695|gb|MT975597.1| 313997 g12212 i0 85.171 95.3015267175573 263 35 99 4 1 261 84 344 Cochliopodium minus clone 2 actin gene, partial cds blastn 24969 267 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
19567741 19567741 PRJNA453567_P_NODE_876_length_1243_cov_2.412935_g801_i0 PRJNA453567 876 1243 2.412935 29.99278205 Vannella septentrionalis 197531 Discosea other_Eukaryota 226 7.069999999999998e-54   NTclustered gi|300078499|gb|GU001161.1| 197531 g801 i0 76.586 21.875301689461 457 79 36 23 794 1243 2295 1860 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27191 226 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;