RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453567 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1716630 1716630 PRJNA453567_P_NODE_14002_length_243_cov_2.286408_g13765_i0 PRJNA453567 14002 243 2.286408 5.55597144 Batrachochytrium dendrobatidis 109871 Fungi Fungi 121 5.92e-23   NTclustered gi|575480991|ref|XM_006679727.1| 684364 g13765 i0 81.046 1.48559670781893 153 27 63 2 56 207 176 25 Batrachochytrium dendrobatidis JAM81 uncharacterized protein (BATDEDRAFT_12294), partial mRNA blastn 361 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
1716793 1716793 PRJNA453567_P_NODE_6822_length_379_cov_2.830409_g6586_i0 PRJNA453567 6822 379 2.830409 10.72725011 Fimicolochytrium jonesii 1396493 Fungi Fungi 52.8 0.036   NTclustered gi|2432080133|ref|XM_053070493.1| 1396493 g6586 i0 100 0.0738786279683377 28 0 7 0 341 368 994 967 Fimicolochytrium jonesii uncharacterized protein (EV422DRAFT_531880), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
22118410 22118410 PRJNA453567_P_NODE_33838_length_151_cov_1.008772_g33601_i0 PRJNA453567 33838 151 1.008772 1.52324572 Fimicolochytrium jonesii 1396493 Fungi Fungi 71.3 3.4e-8   NTclustered gi|2432053713|ref|XM_053064840.1| 1396493 g33601 i0 93.617 0.311258278145695 47 3 31 0 9 55 1391 1437 Fimicolochytrium jonesii MBOAT, membrane-bound O-acyltransferase family-domain-containing protein (EV422DRAFT_144829), mRNA blastn 47 71.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;