RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453567 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5545505 5545505 PRJNA453567_P_NODE_16345_length_222_cov_1.475676_g16108_i0 PRJNA453567 16345 222 1.475676 3.27600072 Simkania negevensis 83561 Bacteria Bacteria 147 8.78e-31   NTclustered gi|336481279|emb|FR872582.1| 331113 g16108 i0 83.871 1.46846846846847 155 24 70 1 33 187 2204102 2204255 Simkania negevensis Z main chromosome, complete genome blastn 326 147 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania negevensis
20843473 20843473 PRJNA453567_P_NODE_16497_length_221_cov_1.271739_g16260_i0 PRJNA453567 16497 221 1.271739 2.81054319 Candidatus Rhabdochlamydia oedothoracis 2720720 Bacteria Bacteria 78.7 3.23e-10   NTclustered gi|2076407543|gb|CP075587.1| 2720720 g16260 i0 97.778 1.06334841628959 45 1 20 0 177 221 1696219 1696175 Candidatus Rhabdochlamydia oedothoracis isolate W744xW776 chromosome, complete genome blastn 235 78.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia oedothoracis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;