RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA453567 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9369671 9369671 PRJNA453567_P_NODE_20128_length_197_cov_1.637500_g19891_i0 PRJNA453567 20128 197 1.6375 3.225875 Nitzschia palea 303400 SAR_Eukaryotes SAR_Eukaryotes 364 1.929999999999999e-96   NTclustered gi|586947715|gb|KF913343.1| 303400 g19891 i0 100 5.26903553299492 197 0 100 0 1 197 430 626 Nitzschia palea strain M2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1038 364 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia palea
15744450 15744450 PRJNA453567_P_NODE_21853_length_188_cov_1.437086_g21616_i0 PRJNA453567 21853 188 1.437086 2.70172168 Nitzschia palea 303400 SAR_Eukaryotes SAR_Eukaryotes 348 1.84e-91   NTclustered gi|586947715|gb|KF913343.1| 303400 g21616 i0 100 5.92553191489362 188 0 100 0 1 188 400 213 Nitzschia palea strain M2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1114 348 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia palea
16395982 16395982 PRJNA453567_P_NODE_16833_length_218_cov_1.806630_g16596_i0 PRJNA453567 16833 218 1.80663 3.9384534 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 124 4.03e-24   NTclustered gi|398372885|gb|JX305463.1| 49249 g16596 i0 79.885 44.6743119266055 174 32 79 3 3 174 1510 1682 Ditylum brightwellii strain B-326 heat shock protein 70 (Hsp70) mRNA, complete cds blastn 9739 124 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Ditylum Ditylum brightwellii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;