RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA453567 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5545492 5545492 PRJNA453567_P_NODE_14245_length_241_cov_1.122549_g14008_i0 PRJNA453567 14245 241 1.122549 2.70534309 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 52.8 0.022   NTclustered gi|2874253889|emb|OY970064.1| 194844 g14008 i0 100 0.116182572614108 28 0 12 0 31 58 4333443 4333416 MAG: uncultured Acidobacteriaceae bacterium isolate MFD06092.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
9369739 9369739 PRJNA453567_P_NODE_31248_length_157_cov_0.975000_g31011_i0 PRJNA453567 31248 157 0.975 1.53075 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 56.5 0.001   NTclustered gi|2621704939|emb|OY762226.1| 2910147 g31011 i0 96.97 0.745222929936306 33 1 21 0 115 147 1875536 1875568 MAG: Vicinamibacterales bacterium isolate 0d5134ca-f8ab-4963-ab29-a032ed897002 genome assembly, chromosome: 1 blastn 117 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;