RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA453567" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA453567 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19567729 19567729 PRJNA453567_P_NODE_6436_length_393_cov_1.421348_g6200_i0 PRJNA453567 6436 393 1.421348 5.58589764 Thecamonas trahens 529818 Root_unresolved Root_unresolved 228 5.8199999999999984e-55   NTclustered gi|923129133|ref|XM_013902579.1| 461836 g6200 i0 82.264 31.7557251908397 265 45 67 2 124 387 1119 856 Thecamonas trahens ATCC 50062 RuvB-like 1 (AMSG_05323), partial mRNA blastn 12480 228 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23394002 23394002 PRJNA453567_P_NODE_1819_length_858_cov_27.779537_g1676_i0 PRJNA453567 1819 858 27.779537 238.34842746 Thecamonas trahens 529818 Root_unresolved Root_unresolved 163 3.83e-35   NTclustered gi|923132316|ref|XM_013904170.1| 461836 g1676 i0 85 1.47552447552448 160 24 19 0 655 814 190 31 Thecamonas trahens ATCC 50062 50S ribosomal protein L37a (AMSG_03714), partial mRNA blastn 1266 163 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;