RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA453111" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453111 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4920954 4920954 PRJNA453111_P_NODE_13124_length_241_cov_0.916667_g13032_i0 PRJNA453111 13124 241 0.916667 2.20916747 Brachionus 10194 Rotifera other_Eukaryota 213 9.4e-51   NTclustered gi|1066800230|gb|KX364937.1| 96890 g13032 i0 82.857 74.2614107883817 245 34 100 6 1 241 939 1179 Brachionus rotundiformis chromosome II mitochondrion, complete sequence blastn 17897 213 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rotundiformis
5545181 5545181 PRJNA453111_P_NODE_6965_length_307_cov_1.316239_g6873_i0 PRJNA453111 6965 307 1.316239 4.04085373 Adineta vaga 104782 Rotifera other_Eukaryota 228 4.429999999999999e-55   NTclustered gi|189313895|gb|EU637017.1| 104782 g6873 i0 84.889 2.20521172638436 225 34 73 0 83 307 30503 30279 Adineta vaga glycoprotein gene, partial cds; and hypothetical proteins, DUF288 containing protein, hypothetical protein, methionine sulfoxide reductase, strabismus, S/T/Y kinase, integral membrane protein, plasma membrane calcium ATPase, myosin alkali light chain, hypothetical protein, hsp82, hypothetical protein, DUF288 containing protein, hypothetical protein, saicars, IBR containing protein, hypothetical proteins, NHL repeat containing protein, ubiquitin ligase, snf7, C2 containing protein, PKD channel, synaptotagmin, and hypothetical protein genes, complete cds blastn 677 228 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
9369324 9369324 PRJNA453111_P_NODE_3628_length_426_cov_1.722380_g3536_i0 PRJNA453111 3628 426 1.72238 7.3373388 Adineta vaga 104782 Rotifera other_Eukaryota 457 7.45e-124   NTclustered gi|402761755|gb|JX184009.1| 104782 g3536 i0 86.15 9.14788732394366 426 55 99 4 1 424 194 617 Adineta vaga cytochrome c oxidase subunit 2 (COX2) gene, complete cds; mitochondrial blastn 3897 457 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
14470062 14470062 PRJNA453111_P_NODE_3552_length_431_cov_1.553073_g3460_i0 PRJNA453111 3552 431 1.553073 6.69374463 Proales similis 360698 Rotifera other_Eukaryota 438 2.73e-118   NTclustered gi|1859640894|gb|MN970216.1| 360698 g3460 i0 85.219 70.9280742459397 433 57 99 6 3 431 12087 12516 Proales similis mitochondrion, complete genome blastn 30570 438 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis
15120672 15120672 PRJNA453111_P_NODE_6112_length_327_cov_1.212598_g6020_i0 PRJNA453111 6112 327 1.212598 3.96519546 Brachionus 10194 Rotifera other_Eukaryota 235 2.84e-57   NTclustered gi|56412203|gb|AY647206.1| 104777 g6020 i0 82.979 78.8593272171254 282 26 84 19 5 278 331 64 Brachionus calyciflorus 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 25787 235 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
20843077 20843077 PRJNA453111_P_NODE_2277_length_545_cov_2.372881_g2185_i0 PRJNA453111 2277 545 2.372881 12.93220145 Philodina citrina 468664 Rotifera other_Eukaryota 560 7.2e-155   NTclustered gi|407227484|emb|FR856884.1| 468664 g2185 i0 86.731 29.4954128440367 520 50 94 16 32 544 1886 2393 Philodina citrina complete mitochondrial genome blastn 16075 560 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;