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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA453111" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453111 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1092868 1092868 PRJNA453111_P_NODE_5601_length_342_cov_0.825279_g5509_i0 PRJNA453111 5601 342 0.825279 2.82245418 Capillaria 119095 Nematoda Nematoda 209 1.81e-49   NTclustered gi|661349435|gb|KJ579531.1| 1503237 g5509 i0 94.203 32.0672514619883 138 7 40 1 205 341 755 892 Capillaria sp. 109CSP_C 28S ribosomal RNA gene, partial sequence blastn 10967 209 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Capillaria Capillaria sp. 109CSP_C
2992111 2992111 PRJNA453111_P_NODE_6723_length_313_cov_1.012500_g6631_i0 PRJNA453111 6723 313 1.0125 3.169125 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 579 1.0899999999999999e-160   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g6631 i0 100 10.1789137380192 313 0 100 0 1 313 1138 1450 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 3186 579 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
5545138 5545138 PRJNA453111_P_NODE_1505_length_672_cov_12.893155_g1417_i0 PRJNA453111 1505 672 12.893155 86.6420016 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1242 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g1417 i0 100 67.4464285714286 672 0 100 0 1 672 2600 3271 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 45324 1242 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
6819134 6819134 PRJNA453111_P_NODE_506_length_1120_cov_1.893028_g457_i0 PRJNA453111 506 1120 1.893028 21.2019136 Trichinella spiralis 6334 Nematoda Nematoda 656 0   NTclustered gi|339254111|ref|XM_003372231.1| 6334 g457 i0 81.681 74.4517857142857 797 138 71 7 1 793 239 1031 Trichinella spiralis moesin/ezrin/radixin protein (Tsp_10541) mRNA, complete cds blastn 83386 656 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
9369292 9369292 PRJNA453111_P_NODE_13228_length_240_cov_3.035928_g13136_i0 PRJNA453111 13228 240 3.035928 7.2862272 Aonchotheca paranalis 2025203 Nematoda Nematoda 231 2.58e-56   NTclustered gi|1279640587|gb|MF621021.1| 2025203 g13136 i0 93.548 31.1375 155 10 65 0 84 238 2689 2843 Aonchotheca paranalis isolate PL 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7473 231 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Aonchotheca Aonchotheca paranalis
11920192 11920192 PRJNA453111_P_NODE_1830_length_609_cov_4.208955_g1739_i0 PRJNA453111 1830 609 4.208955 25.63253595 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1109 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g1739 i0 99.507 39.5385878489327 609 3 100 0 1 609 1096 488 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 24079 1109 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
11920198 11920198 PRJNA453111_P_NODE_2470_length_523_cov_5.517778_g2378_i0 PRJNA453111 2470 523 5.517778 28.85797894 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 961 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g2378 i0 99.809 2.48757170172084 523 1 100 0 1 523 7850 7328 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 1301 961 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
13195030 13195030 PRJNA453111_P_NODE_2111_length_565_cov_2.595528_g2019_i0 PRJNA453111 2111 565 2.595528 14.6647332 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1033 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g2019 i0 99.646 5.38230088495575 565 2 100 0 1 565 4309 4873 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 3041 1033 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
14470049 14470049 PRJNA453111_P_NODE_2372_length_533_cov_1.528261_g2280_i0 PRJNA453111 2372 533 1.528261 8.14563113 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 979 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g2280 i0 99.812 1.30769230769231 533 1 100 0 1 533 8877 8345 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 697 979 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
15744069 15744069 PRJNA453111_P_NODE_3733_length_420_cov_1.095101_g3641_i0 PRJNA453111 3733 420 1.095101 4.5994242 Ancylostoma caninum 29170 Nematoda Nematoda 231 4.8399999999999995e-56   NTclustered gi|86160923|gb|DQ358106.1| 29170 g3641 i0 78.592 0.845238095238095 355 72 84 4 53 405 1369 1721 Ancylostoma caninum paramyosin mRNA, complete cds blastn 355 231 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
15744101 15744101 PRJNA453111_P_NODE_7333_length_299_cov_1.362832_g7241_i0 PRJNA453111 7333 299 1.362832 4.07486768 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 547 2.9099999999999987e-151   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g7241 i0 99.666 1 299 1 100 0 1 299 11530 11232 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 299 547 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
17018729 17018729 PRJNA453111_P_NODE_234_length_1518_cov_6.740484_g204_i0 PRJNA453111 234 1518 6.740484 102.32054712 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 2793 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g204 i0 99.868 55.3965744400527 1518 2 100 0 1 1518 5656 7173 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 84092 2793 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
22117948 22117948 PRJNA453111_P_NODE_3498_length_435_cov_1.055249_g3406_i0 PRJNA453111 3498 435 1.055249 4.59033315 Trichinella spiralis 6334 Nematoda Nematoda 281 4.92e-71   NTclustered gi|339249266|ref|XM_003373573.1| 6334 g3406 i0 80.78 5.15172413793103 359 69 83 0 46 404 1 359 Trichinella spiralis zinc finger protein (Tsp_08212) mRNA, complete cds blastn 2241 281 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
23393627 23393627 PRJNA453111_P_NODE_1719_length_627_cov_2.140794_g1630_i0 PRJNA453111 1719 627 2.140794 13.42277838 Capillaria sp. ALS-2019 2651741 Nematoda Nematoda 152 5.96e-32   NTclustered gi|1811126246|gb|MN526255.1| 2651741 g1630 i0 91.15 10.0079744816587 113 9 18 1 516 627 343 231 Capillaria sp. ALS-2019 large subunit ribosomal RNA gene, partial sequence blastn 6275 152 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Capillaria Capillaria sp. ALS-2019
24667577 24667577 PRJNA453111_P_NODE_12140_length_244_cov_0.900585_g12048_i0 PRJNA453111 12140 244 0.900585 2.1974274 Trichinella spiralis 6334 Nematoda Nematoda 154 5.87e-33   NTclustered gi|254935130|gb|FJ907417.1| 6334 g12048 i0 79.149 0.963114754098361 235 39 94 8 5 234 442 213 Trichinella spiralis CDC-42 mRNA, complete cds blastn 235 154 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;