RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

34 rows where analysis = "blastn", bioproject = "PRJNA453111" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 34 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453111 · 34 ✖

analysis 1

  • blastn · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
441399 441399 PRJNA453111_P_NODE_10961_length_248_cov_0.880000_g10869_i0 PRJNA453111 10961 248 0.88 2.1824 Styela clava 7725 Chordata Chordata 237 5.77e-58   NTclustered gi|1981775934|ref|XM_039399307.1| 7725 g10869 i0 84 94.2459677419355 250 36 100 4 1 248 325 572 PREDICTED: Styela clava tubulin beta chain (LOC120332124), mRNA blastn 23373 237 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
441403 441403 PRJNA453111_P_NODE_11321_length_247_cov_0.885057_g11229_i0 PRJNA453111 11321 247 0.885057 2.18609079 Pleurodeles waltl 8319 Chordata Chordata 283 7.269999999999999e-72   NTclustered gi|2833224241|ref|XM_069242933.1| 8319 g11229 i0 87.398 0.995951417004049 246 31 99 0 2 247 3202 3447 PREDICTED: Pleurodeles waltl alpha-2-macroglobulin-like (LOC138303636), mRNA blastn 246 283 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
441410 441410 PRJNA453111_P_NODE_11981_length_245_cov_0.895349_g11889_i0 PRJNA453111 11981 245 0.895349 2.19360505 Paramesotriton longliensis 608507 Chordata Chordata 453 5.1900000000000006e-123   NTclustered gi|2314706821|gb|ON794000.1| 608507 g11889 i0 100 99.3387755102041 245 0 100 0 1 245 8 252 Paramesotriton longliensis voucher YPX18251 cytochrome b (CYTB) gene, partial cds; mitochondrial blastn 24338 453 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Paramesotriton Paramesotriton longliensis
1716212 1716212 PRJNA453111_P_NODE_10382_length_250_cov_0.870056_g10290_i0 PRJNA453111 10382 250 0.870056 2.17514 Pleurodeles waltl 8319 Chordata Chordata 320 5.62e-83   NTclustered gi|2833169239|ref|XM_069230306.1| 8319 g10290 i0 89.919 0.992 248 25 99 0 3 250 479 726 PREDICTED: Pleurodeles waltl serum albumin-like (LOC138291268), mRNA blastn 248 320 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
1716224 1716224 PRJNA453111_P_NODE_11642_length_246_cov_0.890173_g11550_i0 PRJNA453111 11642 246 0.890173 2.18982558 Triturus karelinii 8325 Chordata Chordata 385 1.93e-102   NTclustered gi|1464252541|gb|MH500767.1| 8325 g11550 i0 95.082 2.97560975609756 244 12 99 0 3 246 443 686 Triturus karelinii DUF-persuasin-like protein mRNA, partial cds blastn 732 385 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Triturus Triturus karelinii
2992065 2992065 PRJNA453111_P_NODE_243_length_1499_cov_1.892006_g212_i0 PRJNA453111 243 1499 1.892006 28.36116994 Neopsephotus bourkii 309878 Chordata Chordata 907 0   NTclustered gi|2633401179|ref|XM_061346596.1| 309878 g212 i0 79.396 86.6130753835891 1291 262 86 4 47 1335 66 1354 PREDICTED: Neopsephotus bourkii tubulin beta-1 chain (LOC133208601), mRNA blastn 129833 907 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Neopsephotus Neopsephotus bourkii
2992067 2992067 PRJNA453111_P_NODE_2803_length_490_cov_1.069544_g2711_i0 PRJNA453111 2803 490 1.069544 5.2407656 Apaloderma vittatum 57397 Chordata Chordata 263 2.0300000000000002e-65   NTclustered gi|699580117|ref|XM_009879502.1| 57397 g2711 i0 78.325 45.3918367346939 406 88 83 0 1 406 416 11 PREDICTED: Apaloderma vittatum ADP-ribosylation factor 6 (ARF6), mRNA blastn 22242 263 1 Eukaryota Opisthokonta Metazoa Chordata Aves Trogoniformes Trogonidae Apaloderma Apaloderma vittatum
2992135 2992135 PRJNA453111_P_NODE_9623_length_256_cov_1.683060_g9531_i0 PRJNA453111 9623 256 1.68306 4.3086336 Lampetra fluviatilis 7748 Chordata Chordata 54.7 0.006   NTclustered gi|2805714147|emb|OZ078410.1| 7748 g9531 i0 100 0.11328125 29 0 11 0 160 188 15598454 15598482 Lampetra fluviatilis genome assembly, chromosome: 7 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
4268456 4268456 PRJNA453111_P_NODE_3064_length_466_cov_0.979644_g2972_i0 PRJNA453111 3064 466 0.979644 4.56514104 Petromyzon marinus 7757 Chordata Chordata 67.6 1.62e-6   NTclustered gi|1822369067|ref|XM_032952085.1| 7757 g2972 i0 90.566 7.70600858369099 53 2 11 2 264 313 1650 1598 PREDICTED: Petromyzon marinus cytoplasmic polyadenylation element binding protein 3 (CPEB3), transcript variant X3, mRNA blastn 3591 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
4268501 4268501 PRJNA453111_P_NODE_7184_length_302_cov_1.554585_g7092_i0 PRJNA453111 7184 302 1.554585 4.6948467 Pleurodeles waltl 8319 Chordata Chordata 431 3.09e-116   NTclustered gi|2833155405|ref|XM_069213587.1| 8319 g7092 i0 92.384 1 302 23 100 0 1 302 1726 2027 PREDICTED: Pleurodeles waltl serotransferrin-A-like (LOC138265672), mRNA blastn 302 431 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
8094643 8094643 PRJNA453111_P_NODE_8307_length_280_cov_1.734300_g8215_i0 PRJNA453111 8307 280 1.7343 4.85604 Hippopotamus amphibius 9833 Chordata Chordata 56.5 0.002   NTclustered gi|2528727178|ref|XM_057719322.1| 575201 g8215 i0 100 3.30714285714286 30 0 11 0 173 202 302 273 PREDICTED: Hippopotamus amphibius kiboko zinc finger X-linked protein ZXDB-like (LOC130842637), mRNA blastn 926 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Hippopotamidae Hippopotamus Hippopotamus amphibius
8745827 8745827 PRJNA453111_P_NODE_4527_length_380_cov_1.003257_g4435_i0 PRJNA453111 4527 380 1.003257 3.8123766 Crocodylia 1294634 Chordata Chordata 54.7 0.01   NTclustered gi|2580346123|ref|XM_059721088.1| 8496 g4435 i0 100 0.789473684210526 29 0 8 0 342 370 777 749 PREDICTED: Alligator mississippiensis collagen type IV alpha 1 chain (COL4A1), mRNA blastn 300 54.7 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
9369248 9369248 PRJNA453111_P_NODE_10348_length_250_cov_0.870056_g10256_i0 PRJNA453111 10348 250 0.870056 2.17514 Pleurodeles waltl 8319 Chordata Chordata 401 1.9499999999999994e-107   NTclustered gi|2833201720|ref|XM_069231743.1| 8319 g10256 i0 95.6 58.944 250 11 100 0 1 250 361 610 PREDICTED: Pleurodeles waltl solute carrier family 27 member 1 (SLC27A1), mRNA blastn 14736 401 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
9369264 9369264 PRJNA453111_P_NODE_11388_length_247_cov_0.885057_g11296_i0 PRJNA453111 11388 247 0.885057 2.18609079 Cricetulus griseus 10029 Chordata Chordata 150 7.7e-32   NTclustered gi|1537969008|ref|XM_003514958.4| 10029 g11296 i0 80.928 23.7692307692308 194 33 78 4 54 245 106 297 PREDICTED: Cricetulus griseus ribosomal protein S15a (Rps15a), mRNA blastn 5871 150 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
9369340 9369340 PRJNA453111_P_NODE_5088_length_358_cov_1.203509_g4996_i0 PRJNA453111 5088 358 1.203509 4.30856222 Myotis lucifugus 59463 Chordata Chordata 211 5.29e-50   NTclustered gi|1335180543|ref|XM_023744739.1| 59463 g4996 i0 82.845 26.9357541899441 239 37 66 4 121 357 1805 1569 PREDICTED: Myotis lucifugus HID1 domain containing (HID1), mRNA blastn 9643 211 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis lucifugus
9369365 9369365 PRJNA453111_P_NODE_7688_length_292_cov_1.018265_g7596_i0 PRJNA453111 7688 292 1.018265 2.9733338 Erinaceus europaeus 9365 Chordata Chordata 182 3.31e-41   NTclustered gi|2591583096|ref|XM_060175897.1| 9365 g7596 i0 79.468 16.222602739726 263 48 89 6 32 291 358 617 PREDICTED: Erinaceus europaeus transaldolase 1 (TALDO1), mRNA blastn 4737 182 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Erinaceidae Erinaceus Erinaceus europaeus
9369367 9369367 PRJNA453111_P_NODE_8128_length_284_cov_1.345972_g8036_i0 PRJNA453111 8128 284 1.345972 3.82256048 Pleurodeles waltl 8319 Chordata Chordata 222 1.89e-53   NTclustered gi|2833204744|ref|XM_069233207.1| 8319 g8036 i0 93.333 7.28521126760563 150 10 98 0 7 156 4242 4093 PREDICTED: Pleurodeles waltl vitellogenin-A2-like (LOC138293928), mRNA blastn 2069 222 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
10021087 10021087 PRJNA453111_P_NODE_6008_length_330_cov_1.105058_g5916_i0 PRJNA453111 6008 330 1.105058 3.6466914 Metazoa 33208 Chordata Chordata 250 1.03e-61   NTclustered gi|1488392159|ref|XM_026720583.1| 8673 g5916 i0 81.15 143.409090909091 313 57 95 2 13 324 359 48 PREDICTED: Pseudonaja textilis histone H4 (LOC113449467), mRNA blastn 47325 250 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Pseudonaja Pseudonaja textilis
10645294 10645294 PRJNA453111_P_NODE_4689_length_373_cov_1.026667_g4597_i0 PRJNA453111 4689 373 1.026667 3.82946791 Branchiostoma lanceolatum 7740 Chordata Chordata 281 4.16e-71   NTclustered gi|2770728434|ref|XM_066445239.1| 7740 g4597 i0 80.601 19.2600536193029 366 69 98 2 4 368 3478 3842 PREDICTED: Branchiostoma lanceolatum splicing factor 3B subunit 1 (LOC136446721), transcript variant X2, mRNA blastn 7184 281 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
10645295 10645295 PRJNA453111_P_NODE_4749_length_371_cov_1.033557_g4657_i0 PRJNA453111 4749 371 1.033557 3.83449647 Anser cygnoides 8845 Chordata Chordata 237 9.07e-58   NTclustered gi|2782202342|ref|XM_013175970.3| 8845 g4657 i0 78.284 100.520215633423 373 77 100 3 1 371 1091 721 PREDICTED: Anser cygnoides calcium/calmodulin dependent protein kinase II alpha (CAMK2A), transcript variant X2, mRNA blastn 37293 237 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
15744006 15744006 PRJNA453111_P_NODE_10613_length_249_cov_0.875000_g10521_i0 PRJNA453111 10613 249 0.875 2.17875 Spea bombifrons 233779 Chordata Chordata 121 6.09e-23   NTclustered gi|2441160966|ref|XM_053462697.1| 233779 g10521 i0 82.963 0.859437751004016 135 21 54 2 73 206 5247 5114 PREDICTED: Spea bombifrons RNA polymerase II subunit A (POLR2A), mRNA blastn 214 121 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Spea Spea bombifrons
15744010 15744010 PRJNA453111_P_NODE_10793_length_249_cov_0.875000_g10701_i0 PRJNA453111 10793 249 0.875 2.17875 Pleurodeles waltl 8319 Chordata Chordata 416 6.939999999999999e-112   NTclustered gi|2833188076|ref|XM_069224689.1| 8319 g10701 i0 96.787 34.7911646586345 249 8 100 0 1 249 206 454 PREDICTED: Pleurodeles waltl actin related protein 3 (ACTR3), mRNA blastn 8663 416 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
17018752 17018752 PRJNA453111_P_NODE_5234_length_353_cov_1.100000_g5142_i0 PRJNA453111 5234 353 1.1 3.883 Pleurodeles waltl 8319 Chordata Chordata 431 3.669999999999999e-116   NTclustered gi|2833169239|ref|XM_069230306.1| 8319 g5142 i0 88.701 1.0028328611898 354 39 100 1 1 353 1780 1427 PREDICTED: Pleurodeles waltl serum albumin-like (LOC138291268), mRNA blastn 354 431 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
17670467 17670467 PRJNA453111_P_NODE_4034_length_404_cov_1.163142_g3942_i0 PRJNA453111 4034 404 1.163142 4.69909368 Metazoa 33208 Chordata Chordata 215 4.67e-51   NTclustered gi|1965545350|ref|XM_039253320.1| 95912 g3942 i0 81.041 10.8861386138614 269 51 67 0 97 365 1625 1357 PREDICTED: Hyaena hyaena O-linked N-acetylglucosamine (GlcNAc) transferase (OGT), transcript variant X1, mRNA blastn 4398 215 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Hyaena Hyaena hyaena
18944380 18944380 PRJNA453111_P_NODE_9455_length_259_cov_1.655914_g9363_i0 PRJNA453111 9455 259 1.655914 4.28881726 Corvidae 28725 Chordata Chordata 145 3.78e-30   NTclustered gi|2813845737|ref|XM_069014856.1| 39617 g9363 i0 81.356 24.4131274131274 177 33 68 0 9 185 1159 1335 PREDICTED: Aphelocoma coerulescens chaperonin containing TCP1 subunit 7 (CCT7), mRNA blastn 6323 145 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Aphelocoma Aphelocoma coerulescens
19567237 19567237 PRJNA453111_P_NODE_4976_length_362_cov_1.598616_g4884_i0 PRJNA453111 4976 362 1.598616 5.78698992 Mus musculus 10090 Chordata Chordata 52.8 0.034   NTclustered gi|49615225|gb|AC115787.6| 10090 g4884 i0 100 0.0773480662983425 28 0 8 0 214 241 55060 55087 Mus musculus chromosome 16, clone RP23-212P1, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20843057 20843057 PRJNA453111_P_NODE_12357_length_243_cov_1.623529_g12265_i0 PRJNA453111 12357 243 1.623529 3.94517547 Manis javanica 9974 Chordata Chordata 422 1.45e-113   NTclustered gi|1926258677|ref|XM_036992668.1| 9974 g12265 i0 97.942 43.0164609053498 243 5 100 0 1 243 5221 5463 PREDICTED: Manis javanica Rho guanine nucleotide exchange factor 12 (ARHGEF12), transcript variant X2, mRNA blastn 10453 422 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
20843082 20843082 PRJNA453111_P_NODE_2937_length_477_cov_1.049505_g2845_i0 PRJNA453111 2937 477 1.049505 5.00613885 Chamaea fasciata 190680 Chordata Chordata 305 3.23e-78   NTclustered gi|2752695593|ref|XM_066174936.1| 190680 g2845 i0 78.586 77.3291404612159 481 90 99 13 2 477 901 1373 PREDICTED: Chamaea fasciata sarcoplasmic/endoplasmic reticulum calcium ATPase 1-like (LOC136284588), mRNA blastn 36886 305 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sylviidae Chamaea Chamaea fasciata
20843086 20843086 PRJNA453111_P_NODE_3297_length_448_cov_2.373333_g3205_i0 PRJNA453111 3297 448 2.373333 10.63253184 Petromyzon marinus 7757 Chordata Chordata 196 1.89e-45   NTclustered gi|1822363003|ref|XM_032945376.1| 7757 g3205 i0 81.224 23.9776785714286 245 44 54 2 11 254 208 451 PREDICTED: Petromyzon marinus dynein light chain 1, cytoplasmic (LOC116938278), mRNA blastn 10742 196 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
20843138 20843138 PRJNA453111_P_NODE_8377_length_279_cov_1.495146_g8285_i0 PRJNA453111 8377 279 1.495146 4.17145734 Lethenteron reissneri 7753 Chordata Chordata 54.7 0.007   NTclustered gi|2635881434|ref|XM_061568594.1| 7753 g8285 i0 100 0.408602150537634 29 0 10 0 207 235 280 252 PREDICTED: Lethenteron reissneri E3 ubiquitin-protein ligase TRIM9-like (LOC133352745), transcript variant X1, mRNA blastn 114 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
24044699 24044699 PRJNA453111_P_NODE_1419_length_692_cov_2.075929_g1331_i0 PRJNA453111 1419 692 2.075929 14.36542868 Metazoa 33208 Chordata Chordata 58.4 0.001   NTclustered gi|1561882196|ref|XM_027862235.1| 29139 g1331 i0 100 1.55202312138728 31 0 4 0 554 584 553 583 PREDICTED: Vombatus ursinus zinc finger protein 830-like (LOC114043201), mRNA blastn 1074 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Vombatidae Vombatus Vombatus ursinus
24667590 24667590 PRJNA453111_P_NODE_13020_length_241_cov_0.916667_g12928_i0 PRJNA453111 13020 241 0.916667 2.20916747 Mus musculus 10090 Chordata Chordata 446 8.519999999999999e-121   NTclustered gi|24380512|gb|BC038930.1| 10090 g12928 i0 100 77.253112033195 241 0 100 0 1 241 680 440 Mus musculus RIKEN cDNA 1110007C09 gene, mRNA (cDNA clone IMAGE:5364934) blastn 18618 446 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
24667654 24667654 PRJNA453111_P_NODE_7200_length_302_cov_1.279476_g7108_i0 PRJNA453111 7200 302 1.279476 3.86401752 Acomys russatus 60746 Chordata Chordata 158 5.79e-34   NTclustered gi|2318358579|ref|XM_051145664.1| 60746 g7108 i0 81.915 1.8476821192053 188 32 62 2 112 298 352 166 PREDICTED: Acomys russatus RNA polymerase II, I and III subunit L (Polr2l), mRNA blastn 558 158 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Acomys Acomys russatus
25319002 25319002 PRJNA453111_P_NODE_10880_length_248_cov_0.880000_g10788_i0 PRJNA453111 10880 248 0.88 2.1824 Lampetra 13103 Chordata Chordata 54.7 0.006   NTclustered gi|2805731953|emb|OZ078406.1| 7748 g10788 i0 100 1.05241935483871 29 0 12 0 48 76 2869908 2869880 Lampetra fluviatilis genome assembly, chromosome: 3 blastn 261 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;