RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA453111" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453111 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4268445 4268445 PRJNA453111_P_NODE_1804_length_614_cov_1.487985_g1714_i0 PRJNA453111 1804 614 1.487985 9.1362279 Pseudomicrostroma glucosiphilum 1684307 Fungi Fungi 62.1 1.01e-4   NTclustered gi|1418631245|ref|XM_025492137.1| 1684307 g1714 i0 89.796 0.60586319218241 49 4 8 1 94 141 1668 1620 Pseudomicrostroma glucosiphilum hypothetical protein (BCV69DRAFT_281849), mRNA blastn 372 62.1 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Microstromatales   Pseudomicrostroma Pseudomicrostroma glucosiphilum
4268506 4268506 PRJNA453111_P_NODE_7784_length_290_cov_1.064516_g7692_i0 PRJNA453111 7784 290 1.064516 3.0870964 Cryptococcus amylolentus 104669 Fungi Fungi 54.7 0.007   NTclustered gi|1101795709|ref|XM_019140816.1| 1295533 g7692 i0 100 0.196551724137931 29 0 10 0 257 285 268 240 Cryptococcus amylolentus CBS 6039 hypothetical protein (L202_06346), mRNA blastn 57 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus amylolentus
13195024 13195024 PRJNA453111_P_NODE_1371_length_705_cov_1.575949_g1284_i0 PRJNA453111 1371 705 1.575949 11.11044045 Tilletiopsis washingtonensis 58919 Fungi Fungi 399 2.1799999999999995e-106   NTclustered gi|1423587035|ref|XM_025743209.1| 58919 g1284 i0 80.185 24.0482269503546 540 101 76 6 74 610 591 55 Tilletiopsis washingtonensis putative GSP1-GTP-binding protein of the ras superfamily (FA09DRAFT_331860), mRNA blastn 16954 399 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Entylomatales   Tilletiopsis Tilletiopsis washingtonensis
14470128 14470128 PRJNA453111_P_NODE_9852_length_252_cov_1.290503_g9760_i0 PRJNA453111 9852 252 1.290503 3.25206756 Pseudozyma hubeiensis 327079 Fungi Fungi 228 3.5399999999999984e-55   NTclustered gi|808367612|ref|XM_012333802.1| 1305764 g9760 i0 83.133 15.8809523809524 249 42 99 0 1 249 249 1 Pseudozyma hubeiensis SY62 Ras-like GTPase partial mRNA blastn 4002 228 1 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Pseudozyma Pseudozyma hubeiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;