RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA453111" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA453111 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4921033 4921033 PRJNA453111_P_NODE_9424_length_260_cov_1.133690_g9332_i0 PRJNA453111 9424 260 1.13369 2.947594 root 1 Root_unresolved Root_unresolved 481 2.55e-131   NTclustered gi|1214359213|gb|MF424753.1| 1613 g9332 i0 100 194 260 0 100 0 1 260 878 1137 Limosilactobacillus fermentum strain CAU6386 16S ribosomal RNA gene, partial sequence blastn 50440 481 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum
17670479 17670479 PRJNA453111_P_NODE_4714_length_372_cov_1.314381_g4622_i0 PRJNA453111 4714 372 1.314381 4.88949732 Lachnospiraceae 186803 Bacteria Bacteria 52.8 0.035   NTclustered gi|2813041527|emb|OZ186729.1| 33038 g4622 i0 100 0.526881720430108 28 0 8 0 24 51 2489714 2489687 Mediterraneibacter gnavus isolate LUMC_Rgna_QRD035 genome assembly, chromosome: 1 blastn 196 52.8 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter gnavus
23393638 23393638 PRJNA453111_P_NODE_3379_length_442_cov_1.691057_g3287_i0 PRJNA453111 3379 442 1.691057 7.47447194 Clostridium perfringens 1502 Bacteria Bacteria 52.8 0.043   NTclustered gi|2100434541|gb|CP075946.1| 1502 g3287 i0 100 0.0633484162895928 28 0 6 0 54 81 34618 34645 Clostridium perfringens strain 955/85 plasmid pCP955-85 blastn 28 52.8 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;