RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA453111" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA453111 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13195074 13195074 PRJNA453111_P_NODE_7211_length_302_cov_1.008734_g7119_i0 PRJNA453111 7211 302 1.008734 3.04637668 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 134 9.76e-27   NTclustered gi|2794923360|ref|XM_067881981.1| 164328 g7119 i0 76.245 5.72847682119205 261 57 85 4 46 302 439 180 Phytophthora ramorum Calmodulin (KRP23_11430), partial mRNA blastn 1730 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
20843101 20843101 PRJNA453111_P_NODE_5157_length_356_cov_0.752650_g5065_i0 PRJNA453111 5157 356 0.75265 2.679434 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.034   NTclustered gi|145494759|ref|XM_001433337.1| 5888 g5065 i0 100 0.0786516853932584 28 0 8 0 137 164 1362 1389 Paramecium tetraurelia uncharacterized protein (GSPATT00006476001), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
22117977 22117977 PRJNA453111_P_NODE_6918_length_308_cov_1.663830_g6826_i0 PRJNA453111 6918 308 1.66383 5.1245964 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.029   NTclustered gi|2795027578|ref|XM_067926281.1| 4785 g6826 i0 100 0.0909090909090909 28 0 9 0 136 163 135 162 Phytophthora cinnamomi myosinlike protein (IUM83_02370), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;