RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA453111" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA453111 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10645236 10645236 PRJNA453111_P_NODE_11029_length_248_cov_0.880000_g10937_i0 PRJNA453111 11029 248 0.88 2.1824 Acytostelium subglobosum 361139 Evosea other_Eukaryota 82.4 2.86e-11   NTclustered gi|831769153|ref|XM_012897164.1| 1410327 g10937 i0 90.323 0.548387096774194 62 6 30 0 52 113 209 148 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 136 82.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
10645238 10645238 PRJNA453111_P_NODE_11309_length_247_cov_0.885057_g11217_i0 PRJNA453111 11309 247 0.885057 2.18609079 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 237 5.74e-58   NTclustered gi|423292025|gb|JQ519458.1| 704142 g11217 i0 84.082 94.9514170040486 245 39 99 0 1 245 342 98 Saccamoeba lacustris clone JG10.115_b9 actin gene, partial cds blastn 23453 237 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;