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contig_metadata

32 rows where analysis = "blastn", bioproject = "PRJNA451191" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA451191 · 32 ✖

analysis 1

  • blastn · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
440898 440898 PRJNA451191_P_NODE_44581_length_213_cov_1.282895_g44310_i0 PRJNA451191 44581 213 1.282895 2.73256635 Lepidochelys kempii 8472 Chordata Chordata 52.8 0.019   NTclustered gi|2911498716|emb|OZ223603.1| 8472 g44310 i0 100 0.262910798122066 28 0 13 0 20 47 21613299 21613326 Lepidochelys kempii isolate rLepKem1 genome assembly, chromosome: 17 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
1092667 1092667 PRJNA451191_P_NODE_24921_length_285_cov_1.741071_g24650_i0 PRJNA451191 24921 285 1.741071 4.9620523499999996 Chordata 7711 Chordata Chordata 54.7 0.007   NTclustered gi|219560041|gb|AC140184.4| 10090 g24650 i0 100 2.56491228070175 29 0 10 0 4 32 89121 89093 Mus musculus BAC clone RP24-354G1 from chromosome 12, complete sequence blastn 731 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1715314 1715314 PRJNA451191_P_NODE_31942_length_252_cov_1.020942_g31671_i0 PRJNA451191 31942 252 1.020942 2.57277384 Meleagris gallopavo 9103 Chordata Chordata 56.5 0.002   NTclustered gi|1776505047|ref|XR_004159552.1| 9103 g31671 i0 100 0.357142857142857 30 0 12 0 84 113 9427 9398 PREDICTED: Meleagris gallopavo uncharacterized LOC104910660 (LOC104910660), transcript variant X1, ncRNA blastn 90 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
3643670 3643670 PRJNA451191_P_NODE_31063_length_255_cov_1.340206_g30792_i0 PRJNA451191 31063 255 1.340206 3.4175253 Saccopteryx 59481 Chordata Chordata 54.7 0.006   NTclustered gi|2753735508|ref|XM_066279042.1| 59482 g30792 i0 96.875 1.25490196078431 32 1 13 0 220 251 5595 5626 PREDICTED: Saccopteryx bilineata sodium channel protein type 1 subunit alpha (LOC136337604), transcript variant X3, mRNA blastn 320 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Emballonuridae Saccopteryx Saccopteryx bilineata
3643705 3643705 PRJNA451191_P_NODE_41483_length_221_cov_1.625000_g41212_i0 PRJNA451191 41483 221 1.625 3.59125 Orectolobiformes 30503 Chordata Chordata 52.8 0.02   NTclustered gi|2096709751|ref|XM_043705869.1| 36176 g41212 i0 100 1.39366515837104 28 0 13 0 146 173 2712 2685 PREDICTED: Chiloscyllium plagiosum signal peptide, CUB domain, EGF-like 2 (scube2), transcript variant X1, mRNA blastn 308 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
4267410 4267410 PRJNA451191_P_NODE_30764_length_256_cov_1.815385_g30493_i0 PRJNA451191 30764 256 1.815385 4.6473856 Tamiops rodolphii 1048688 Chordata Chordata 65.8 2.99e-6   NTclustered gi|337742943|gb|HQ698395.1| 1048688 g30493 i0 97.368 14.72265625 38 1 15 0 94 131 444 407 Tamiops rodolphii voucher IEBR-JP124 cytochrome b (cyt-b) gene, complete cds; mitochondrial blastn 3769 65.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Tamiops Tamiops rodolphii
5544803 5544803 PRJNA451191_P_NODE_52805_length_204_cov_0.909091_g52534_i0 PRJNA451191 52805 204 0.909091 1.85454564 Rattus norvegicus 10116 Chordata Chordata 52.8 0.018   NTclustered gi|186973219|gb|AC131400.5| 10116 g52534 i0 100 0.137254901960784 28 0 14 0 66 93 138039 138012 Rattus norvegicus BAC CH230-139P17 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
6195758 6195758 PRJNA451191_P_NODE_50685_length_206_cov_0.896552_g50414_i0 PRJNA451191 50685 206 0.896552 1.84689712 Metazoa 33208 Chordata Chordata 67.6 6.43e-7   NTclustered gi|2805728290|emb|OZ078519.1| 7750 g50414 i0 87.097 109.067961165049 62 4 28 4 148 205 4838179 4838118 Lampetra planeri genome assembly, chromosome: 34 blastn 22468 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
7470710 7470710 PRJNA451191_P_NODE_49826_length_207_cov_0.890411_g49555_i0 PRJNA451191 49826 207 0.890411 1.84315077 Corvus 30420 Chordata Chordata 52.8 0.018   NTclustered gi|2052102721|ref|XM_042053807.1| 68294 g49555 i0 100 1.21739130434783 28 0 14 0 51 78 5559 5532 PREDICTED: Corvus kubaryi trihelix transcription factor GTL1-like (LOC121676830), transcript variant X2, mRNA blastn 252 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Corvus Corvus kubaryi
8093315 8093315 PRJNA451191_P_NODE_23487_length_294_cov_1.656652_g23216_i0 PRJNA451191 23487 294 1.656652 4.87055688 Podarcis muralis 64176 Chordata Chordata 54.7 0.008   NTclustered gi|1622065819|ref|XM_028736454.1| 64176 g23216 i0 100 0.0986394557823129 29 0 10 0 127 155 2161 2133 PREDICTED: Podarcis muralis uncharacterized LOC114600403 (LOC114600403), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis muralis
9368765 9368765 PRJNA451191_P_NODE_46228_length_210_cov_1.744966_g45957_i0 PRJNA451191 46228 210 1.744966 3.6644286 Anolis carolinensis 28377 Chordata Chordata 128 2.98e-25   NTclustered gi|2672806569|ref|XM_062973317.1| 28377 g45957 i0 77.934 1.01428571428571 213 41 100 5 1 210 7014 7223 PREDICTED: Anolis carolinensis uncharacterized LOC100558310 (LOC100558310), mRNA blastn 213 128 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dactyloidae Anolis Anolis carolinensis
9368946 9368946 PRJNA451191_P_NODE_53788_length_203_cov_0.915493_g53517_i0 PRJNA451191 53788 203 0.915493 1.85845079 Pyrrhula murina 928672 Chordata Chordata 52.8 0.018   NTclustered gi|2920008265|emb|OZ238998.1| 928672 g53517 i0 100 0.137931034482759 28 0 14 0 156 183 35583576 35583603 Pyrrhula murina genome assembly, chromosome: 4 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Pyrrhula Pyrrhula murina
10644518 10644518 PRJNA451191_P_NODE_37549_length_232_cov_2.245614_g37278_i0 PRJNA451191 37549 232 2.2456140000000002 5.20982448 Gopherus flavomarginatus 286002 Chordata Chordata 54.7 0.006   NTclustered gi|2312267244|ref|XM_050921242.1| 286002 g37278 i0 100 0.125 29 0 13 0 18 46 2078 2106 PREDICTED: Gopherus flavomarginatus butyrophilin subfamily 1 member A1-like (LOC127033291), transcript variant X2, mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Testudinidae Gopherus Gopherus flavomarginatus
11295786 11295786 PRJNA451191_P_NODE_27969_length_269_cov_1.201923_g27698_i0 PRJNA451191 27969 269 1.201923 3.23317287 Fringillidae 9133 Chordata Chordata 54.7 0.007   NTclustered gi|2917663466|emb|OZ228753.1| 160760 g27698 i0 92.308 0.397769516728625 39 1 14 2 220 257 71795 71758 Spinus spinus genome assembly, chromosome: 5 blastn 107 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
11919296 11919296 PRJNA451191_P_NODE_34670_length_242_cov_1.071823_g34399_i0 PRJNA451191 34670 242 1.071823 2.59381166 Mus musculus 10090 Chordata Chordata 448 2.3799999999999995e-121   NTclustered gi|1434874729|gb|BC037638.2| 10090 g34399 i0 100 100.01652892562 242 0 100 0 1 242 724 965 Mus musculus TPA regulated locus, mRNA (cDNA clone IMAGE:5006478), partial cds blastn 24204 448 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
11919557 11919557 PRJNA451191_P_NODE_41990_length_220_cov_1.163522_g41719_i0 PRJNA451191 41990 220 1.163522 2.5597484 Spinus spinus 160760 Chordata Chordata 52.8 0.019   NTclustered gi|2917666805|emb|OZ228757.1| 160760 g41719 i0 100 0.254545454545455 28 0 13 0 108 135 20440072 20440099 Spinus spinus genome assembly, chromosome: 9 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
11919662 11919662 PRJNA451191_P_NODE_45450_length_211_cov_1.300000_g45179_i0 PRJNA451191 45450 211 1.3 2.743 Meriones unguiculatus 10047 Chordata Chordata 52.8 0.019   NTclustered gi|2599563090|ref|XR_009591242.1| 10047 g45179 i0 100 0.132701421800948 28 0 13 0 3 30 879 852 PREDICTED: Meriones unguiculatus uncharacterized LOC132653512 (LOC132653512), ncRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Meriones Meriones unguiculatus
12571615 12571615 PRJNA451191_P_NODE_48290_length_208_cov_1.408163_g48019_i0 PRJNA451191 48290 208 1.408163 2.92897904 Metazoa 33208 Chordata Chordata 58.4 3.92e-4   NTclustered gi|242115383|emb|FN413873.1| 9796 g48019 i0 100 10.4086538461538 31 0 15 0 42 72 227 197 Equus caballus microsatellite DNA, locus ABGe8276 blastn 2165 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
13194474 13194474 PRJNA451191_P_NODE_44751_length_212_cov_2.172185_g44480_i0 PRJNA451191 44751 212 2.172185 4.6050322 Ursus arctos 9644 Chordata Chordata 56.5 0.001   NTclustered gi|2517454822|ref|XM_026488506.4| 9644 g44480 i0 100 0.141509433962264 30 0 14 0 16 45 5477 5506 PREDICTED: Ursus arctos calcium voltage-gated channel auxiliary subunit gamma 6 (CACNG6), mRNA blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ursus Ursus arctos
13194541 13194541 PRJNA451191_P_NODE_47691_length_209_cov_0.878378_g47420_i0 PRJNA451191 47691 209 0.878378 1.83581002 Mus musculus 10090 Chordata Chordata 52.8 0.018   NTclustered gi|82697837|gb|AC164120.2| 10090 g47420 i0 96.774 0.148325358851675 31 1 15 0 93 123 59184 59214 Mus musculus BAC clone RP24-289J17 from chromosome 14, complete sequence blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
13846166 13846166 PRJNA451191_P_NODE_21711_length_307_cov_2.500000_g21440_i0 PRJNA451191 21711 307 2.5 7.675 root 1 Root_unresolved Root_unresolved 52.8 0.029   NTclustered gi|2917691352|emb|OZ228803.1| 37598 g21440 i0 100 0.364820846905537 28 0 9 0 34 61 2462767 2462740 Fringilla coelebs genome assembly, chromosome: 24 blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
15743400 15743400 PRJNA451191_P_NODE_40413_length_224_cov_1.595092_g40142_i0 PRJNA451191 40413 224 1.595092 3.57300608 Phascolarctos cinereus 38626 Chordata Chordata 56.5 0.002   NTclustered gi|1190385016|ref|XM_020986929.1| 38626 g40142 i0 100 0.401785714285714 30 0 13 0 91 120 8830 8801 PREDICTED: Phascolarctos cinereus zinc finger protein 236 (ZNF236), transcript variant X2, mRNA blastn 90 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phascolarctidae Phascolarctos Phascolarctos cinereus
15743671 15743671 PRJNA451191_P_NODE_50913_length_206_cov_0.896552_g50642_i0 PRJNA451191 50913 206 0.896552 1.84689712 Apteryx mantelli 2696672 Chordata Chordata 52.8 0.018   NTclustered gi|840011334|emb|LK064741.1| 202946 g50642 i0 100 0.135922330097087 28 0 14 0 156 183 3687805 3687832 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold145 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
17017311 17017311 PRJNA451191_P_NODE_19874_length_322_cov_2.348659_g19603_i0 PRJNA451191 19874 322 2.348659 7.56268198 Mus musculus 10090 Chordata Chordata 52.8 0.03   NTclustered gi|57470703|gb|AC151530.2| 10090 g19603 i0 100 0.173913043478261 28 0 9 0 172 199 152814 152841 Mus musculus BAC clone RP24-330K6 from 13, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
17018318 17018318 PRJNA451191_P_NODE_50754_length_206_cov_0.896552_g50483_i0 PRJNA451191 50754 206 0.896552 1.84689712 Sitta europaea 50251 Chordata Chordata 52.8 0.018   NTclustered gi|2917585557|emb|OZ228638.1| 50251 g50483 i0 100 0.271844660194175 28 0 14 0 53 80 8592265 8592292 Sitta europaea genome assembly, chromosome: 17 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sittidae Sitta Sitta europaea
17018464 17018464 PRJNA451191_P_NODE_56594_length_192_cov_4.244275_g56323_i0 PRJNA451191 56594 192 4.244275 8.149008 Polypterus senegalus 55291 Chordata Chordata 259 9.08e-65   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g56323 i0 91.146 18.0989583333333 192 16 99 1 1 191 1381 1190 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 3475 259 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
18291767 18291767 PRJNA451191_P_NODE_22655_length_300_cov_1.087866_g22384_i0 PRJNA451191 22655 300 1.087866 3.263598 Mus musculus 10090 Chordata Chordata 58.4 6e-4   NTclustered gi|149944894|gb|AC201931.3| 10090 g22384 i0 100 0.326666666666667 31 0 10 0 100 130 8916 8886 Mus musculus BAC clone CH36-115H9 from chromosome y, complete sequence blastn 98 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18292690 18292690 PRJNA451191_P_NODE_52535_length_204_cov_0.909091_g52264_i0 PRJNA451191 52535 204 0.909091 1.85454564 Narcine bancroftii 1343680 Chordata Chordata 52.8 0.018   NTclustered gi|2853495889|ref|XM_069924015.1| 1343680 g52264 i0 100 0.274509803921569 28 0 14 0 77 104 5447 5474 PREDICTED: Narcine bancroftii uncharacterized protein (LOC138757147), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Torpediniformes Narcinidae Narcine Narcine bancroftii
19566821 19566821 PRJNA451191_P_NODE_50676_length_206_cov_0.896552_g50405_i0 PRJNA451191 50676 206 0.896552 1.84689712 Ursus arctos 9644 Chordata Chordata 132 2.25e-26   NTclustered gi|2517473471|ref|XM_026509349.4| 9644 g50405 i0 81.988 61.3834951456311 161 23 76 6 51 206 2396 2237 PREDICTED: Ursus arctos chromosome unknown C1orf105 homolog (CUNH1orf105), transcript variant X3, mRNA blastn 12645 132 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ursus Ursus arctos
20841713 20841713 PRJNA451191_P_NODE_21077_length_312_cov_1.884462_g20806_i0 PRJNA451191 21077 312 1.884462 5.87952144 Physeter macrocephalus 9755 Chordata Chordata 52.8 0.029   NTclustered gi|593762592|ref|XM_007119883.1| 9755 g20806 i0 96.774 0.0993589743589744 31 1 10 0 214 244 885 855 PREDICTED: Physeter macrocephalus ELOVL fatty acid elongase 2 (ELOVL2), mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
20842653 20842653 PRJNA451191_P_NODE_49737_length_207_cov_0.890411_g49466_i0 PRJNA451191 49737 207 0.890411 1.84315077 Mus musculus 10090 Chordata Chordata 52.8 0.018   NTclustered gi|74096504|gb|AC160398.8| 10090 g49466 i0 100 0.135265700483092 28 0 14 0 27 54 80082 80055 Mus musculus 6 BAC RP23-162K3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22117416 22117416 PRJNA451191_P_NODE_45338_length_211_cov_1.666667_g45067_i0 PRJNA451191 45338 211 1.666667 3.51666737 Mus musculus 10090 Chordata Chordata 54.7 0.005   NTclustered gi|354790113|gb|JN954614.1| 10090 g45067 i0 100 0.322274881516588 29 0 14 0 183 211 3173 3145 Mus musculus targeted deletion, lacZ-tagged mutant allele Rin3:tm1(KOMP)Wtsi; transgenic blastn 68 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;