RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA451191" and tax_phylum = "Ascomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA451191 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1092641 1092641 PRJNA451191_P_NODE_20221_length_319_cov_2.143411_g19950_i0 PRJNA451191 20221 319 2.143411 6.83748109 Cladosporium 5498 Fungi Fungi 573 5.159999999999998e-159   NTclustered gi|284158823|gb|GU214410.1| 29918 g19950 i0 99.06 96.551724137931 319 3 100 0 1 319 3269 2951 Cladosporium herbarum strain CBS 723.79 28S large subunit ribosomal RNA gene, partial sequence blastn 30800 573 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium herbarum
4268038 4268038 PRJNA451191_P_NODE_50764_length_206_cov_0.896552_g50493_i0 PRJNA451191 50764 206 0.896552 1.84689712 Eremothecium gossypii 33169 Fungi Fungi 71.3 4.97e-8   NTclustered gi|47074551|ref|NM_210935.1| 284811 g50493 i0 93.617 3.86407766990291 47 3 23 0 156 202 302 256 Eremothecium gossypii ATCC 10895 60S ribosomal protein eL42 (AGOS_AFR034W), partial mRNA blastn 796 71.3 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Eremothecium Eremothecium gossypii
6195723 6195723 PRJNA451191_P_NODE_40745_length_223_cov_1.604938_g40474_i0 PRJNA451191 40745 223 1.604938 3.57901174 Ascolacicola 99679 Fungi Fungi 412 7.88e-111   NTclustered gi|2877525104|gb|PQ844522.1| 99680 g40474 i0 100 100.008968609865 223 0 100 0 1 223 859 637 Ascolacicola aquatica strain KUNCC:23-16631 small subunit ribosomal RNA gene, partial sequence blastn 22302 412 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Sordariales   Ascolacicola Ascolacicola aquatica
6818254 6818254 PRJNA451191_P_NODE_34286_length_243_cov_1.428571_g34015_i0 PRJNA451191 34286 243 1.428571 3.47142753 Plenodomus biglobosus 220672 Fungi Fungi 420 5.21e-113   NTclustered gi|702073470|emb|FO905844.1| 225344 g34015 i0 97.942 95.7818930041152 243 4 100 1 1 243 17041 17282 Leptosphaeria biglobosa Thlaspii ibcn65_scaffold00057 complete sequence blastn 23275 420 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Leptosphaeriaceae Plenodomus Plenodomus biglobosus
8745659 8745659 PRJNA451191_P_NODE_30587_length_257_cov_1.326531_g30316_i0 PRJNA451191 30587 257 1.326531 3.40918467 Pleosporales 92860 Fungi Fungi 359 1.23e-94   NTclustered gi|2228964925|ref|NC_062622.1| 95742 g30316 i0 91.829 102.035019455253 257 21 100 0 1 257 23629 23885 Curvularia clavata mitochondrion, complete genome blastn 26223 359 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Curvularia Curvularia clavata
10020906 10020906 PRJNA451191_P_NODE_35628_length_238_cov_2.531073_g35357_i0 PRJNA451191 35628 238 2.531073 6.02395374 Ascomycota 4890 Fungi Fungi 440 3.899999999999999e-119   NTclustered gi|2324126172|gb|OP750342.1| 13684 g35357 i0 100 106.004201680672 238 0 100 0 1 238 55 292 Parastagonospora nodorum isolate DTP-4 small subunit ribosomal RNA gene, partial sequence blastn 25229 440 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Phaeosphaeriaceae Parastagonospora Parastagonospora nodorum
13194369 13194369 PRJNA451191_P_NODE_41571_length_221_cov_1.375000_g41300_i0 PRJNA451191 41571 221 1.375 3.03875 Golovinomyces sordidus 62717 Fungi Fungi 403 4.69e-108   NTclustered gi|28188930|dbj|AB077657.1| 62717 g41300 i0 99.55 100.420814479638 222 0 100 1 1 221 415 636 Golovinomyces sordidus gene for 28S rRNA, partial sequence, isolate: MUMHn41 blastn 22193 403 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Erysiphales Erysiphaceae Golovinomyces Golovinomyces sordidus
16395349 16395349 PRJNA451191_P_NODE_56393_length_194_cov_2.699248_g56122_i0 PRJNA451191 56393 194 2.699248 5.23654112 Opisthokonta 33154 Fungi Fungi 359 8.809999999999999e-95   NTclustered gi|154563029|gb|EF590320.2| 13684 g56122 i0 100 122.510309278351 194 0 100 0 1 194 1656 1463 Phaeosphaeria nodorum strain S-80-603 large subunit ribosomal RNA gene, partial sequence blastn 23767 359 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Phaeosphaeriaceae Parastagonospora Parastagonospora nodorum
17670286 17670286 PRJNA451191_P_NODE_27014_length_273_cov_2.891509_g26743_i0 PRJNA451191 27014 273 2.891509 7.89381957 Golovinomyces 184027 Fungi Fungi 483 7.5e-132   NTclustered gi|1829011279|dbj|LC516963.1| 184028 g26743 i0 98.889 98.8791208791209 270 3 99 0 4 273 26 295 Golovinomyces adenophorae MUMH<JPN>144 genes for 18S rRNA, ITS1, partial sequence blastn 26994 483 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Erysiphales Erysiphaceae Golovinomyces Golovinomyces adenophorae
17670375 17670375 PRJNA451191_P_NODE_56614_length_192_cov_3.396947_g56343_i0 PRJNA451191 56614 192 3.396947 6.52213824 Ascomycota 4890 Fungi Fungi 355 1.13e-93   NTclustered gi|1772639949|gb|MN644567.1| 45271 g56343 i0 100 106.885416666667 192 0 100 0 1 192 789 598 Pseudallescheria ellipsoidea voucher research collection Farrer lab 84 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20522 355 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Microascales Microascaceae Pseudallescheria Pseudallescheria ellipsoidea
24044607 24044607 PRJNA451191_P_NODE_52119_length_204_cov_4.370629_g51848_i0 PRJNA451191 52119 204 4.370629 8.91608316 Hypocreales 5125 Fungi Fungi 363 7.239999999999998e-96   NTclustered gi|1859735559|gb|MT644877.1| 29855 g51848 i0 99.01 99.2696078431373 202 2 99 0 3 204 3933 3732 Nectria cinnabarina isolate DM1152 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20251 366 0.991803278688525 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Nectria Nectria cinnabarina
25318797 25318797 PRJNA451191_P_NODE_11160_length_447_cov_3.308290_g10889_i0 PRJNA451191 11160 447 3.30829 14.7880563 Eukaryota 2759 Fungi Fungi 616 1.22e-171   NTclustered gi|28188954|dbj|AB077681.1| 62708 g10889 i0 98.291 78.8008948545861 351 6 79 0 97 447 357 7 Golovinomyces cichoracearum gene for 28S rRNA, partial sequence, isolate: MUMH759 blastn 35224 616 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Erysiphales Erysiphaceae Golovinomyces Golovinomyces cichoracearum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;