RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA451191" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA451191 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2368097 2368097 PRJNA451191_P_NODE_26802_length_274_cov_3.953052_g26531_i0 PRJNA451191 26802 274 3.953052 10.83136248 root 1 Root_unresolved Root_unresolved 496 9.67e-136   NTclustered gi|2507491536|dbj|LC749599.1| 51714 g26531 i0 99.27 102.138686131387 274 2 100 0 1 274 111742 112015 Volvox africanus NIES-4468 DNA, SD-like region blastn 27986 496 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
3643733 3643733 PRJNA451191_P_NODE_48343_length_208_cov_1.299320_g48072_i0 PRJNA451191 48343 208 1.29932 2.7025856 Eukaryota 2759 Plants Plants 379 7.359999999999998e-101   NTclustered gi|359385188|emb|FR865599.1| 3054 g48072 i0 99.519 100 208 1 100 0 1 208 1692 1899 Chlamydomonas moewusii genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 11/61A blastn 20800 379 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas moewusii
9369162 9369162 PRJNA451191_P_NODE_8188_length_540_cov_4.782881_g7918_i0 PRJNA451191 8188 540 4.782881 25.8275574 Bryopsis sp. HV04063 1979421 Plants Plants 183 1.8e-41   NTclustered gi|1381384260|ref|NC_037363.1| 1979421 g7918 i0 81.25 73.4296296296296 240 33 44 8 6 241 15386 15617 Bryopsis sp. HV04063 chloroplast, complete genome blastn 39652 183 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. HV04063
20218976 20218976 PRJNA451191_P_NODE_57396_length_170_cov_5.045872_g57125_i0 PRJNA451191 57396 170 5.045872 8.5779824 root 1 Root_unresolved Root_unresolved 309 7.64e-80   NTclustered gi|2507491536|dbj|LC749599.1| 51714 g57125 i0 99.412 100.311764705882 170 1 100 0 1 170 112794 112963 Volvox africanus NIES-4468 DNA, SD-like region blastn 17053 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
21494551 21494551 PRJNA451191_P_NODE_47837_length_209_cov_0.878378_g47566_i0 PRJNA451191 47837 209 0.878378 1.83581002 Eukaryota 2759 Plants Plants 171 4.849999999999999e-38   NTclustered gi|59891808|gb|AY779895.1| 299577 g47566 i0 89.552 70.8612440191388 134 14 64 0 55 188 1288 1421 Schizochlamys gelatinosa strain GR26 26S ribosomal RNA gene, partial sequence blastn 14810 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Schizochlamydaceae Schizochlamys Schizochlamys gelatinosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;