RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA450632" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA450632 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6195560 6195560 PRJNA450632_P_NODE_1045_length_1152_cov_12.430618_g960_i0 PRJNA450632 1045 1152 12.430618 143.20071936 Cutibacterium 1912216 Bacteria Bacteria 2117 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g960 i0 99.826 254.508680555556 1152 2 100 0 1 1152 55360 56511 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 293194 2117 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
11295675 11295675 PRJNA450632_P_NODE_20709_length_164_cov_6.155039_g20530_i0 PRJNA450632 20709 164 6.155039 10.09426396 Actinomycetes 1760 Bacteria Bacteria 303 3.42e-78   NTclustered gi|255761303|gb|GQ338419.1| 38284 g20530 i0 100 98.8780487804878 164 0 100 0 1 164 339 176 Corynebacterium accolens strain CHL-B21438 16S ribosomal RNA gene, partial sequence blastn 16216 303 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens
11918145 11918145 PRJNA450632_P_NODE_21430_length_161_cov_1.325397_g21251_i0 PRJNA450632 21430 161 1.325397 2.13388917 Curtobacterium sp. 9128 1793722 Bacteria Bacteria 58.4 2.87e-4   NTclustered gi|1032524578|emb|LT576451.1| 1793722 g21251 i0 100 0.192546583850932 31 0 19 0 111 141 408893 408923 Curtobacterium sp. 9128 genome assembly, chromosome: I blastn 31 58.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. 9128
13193030 13193030 PRJNA450632_P_NODE_23731_length_151_cov_1.948276_g23552_i0 PRJNA450632 23731 151 1.948276 2.94189676 Nocardioides sp. S5 2017486 Bacteria Bacteria 268 1.12e-67   NTclustered gi|1999037722|gb|CP022296.1| 2017486 g23552 i0 98.675 293.397350993377 151 2 100 0 1 151 1843153 1843303 Nocardioides sp. S5 chromosome, complete genome blastn 44303 268 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. S5
15741994 15741994 PRJNA450632_P_NODE_19653_length_170_cov_2.296296_g19474_i0 PRJNA450632 19653 170 2.296296 3.9037032 Corynebacterium sp. LaCa97 3391431 Bacteria Bacteria 313 5.91e-81   NTclustered gi|2888564179|gb|CP177110.1| 3391431 g19474 i0 100 339.029411764706 169 0 99 0 1 169 770021 770189 Corynebacterium sp. LaCa97 chromosome, complete genome blastn 57635 313 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. LaCa97
17016492 17016492 PRJNA450632_P_NODE_13374_length_220_cov_3.145946_g13195_i0 PRJNA450632 13374 220 3.145946 6.9210812 Corynebacterium sp. LaCa97 3391431 Bacteria Bacteria 385 1.69e-102   NTclustered gi|2888564179|gb|CP177110.1| 3391431 g13195 i0 98.624 319.75 218 2 99 1 3 220 768811 769027 Corynebacterium sp. LaCa97 chromosome, complete genome blastn 70345 385 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. LaCa97
19565144 19565144 PRJNA450632_P_NODE_19056_length_174_cov_1.719424_g18877_i0 PRJNA450632 19056 174 1.719424 2.99179776 Cutibacterium granulosum 33011 Bacteria Bacteria 322 1.01e-83   NTclustered gi|2438329814|dbj|AP026710.1| 33011 g18877 i0 100 182.902298850575 174 0 100 0 1 174 485888 486061 Cutibacterium granulosum TP-CG7 DNA, complete genome blastn 31825 322 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium granulosum
22769505 22769505 PRJNA450632_P_NODE_4578_length_466_cov_3.779582_g4402_i0 PRJNA450632 4578 466 3.779582 17.61285212 Gordonia 2053 Bacteria Bacteria 616 1.2799999999999996e-171   NTclustered gi|2325992771|gb|CP085887.1| 84595 g4402 i0 92.027 250.206008583691 439 33 94 2 29 466 102936 103373 Gordonia polyisoprenivorans strain B251 chromosome, complete genome blastn 116596 616 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia polyisoprenivorans
24044390 24044390 PRJNA450632_P_NODE_1959_length_810_cov_16.997419_g80_i2 PRJNA450632 1959 810 16.997419 137.6790939 Micrococcus 1269 Bacteria Bacteria 1256 0   NTclustered gi|1949953231|gb|CP066288.1| 1270 g80 i2 94.704 324.233333333333 812 38 100 5 1 810 2260244 2261052 Micrococcus luteus strain FDAARGOS_1034 chromosome blastn 262629 1262 0.995245641838352 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;