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contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA450632" and tax_kingdom = "Viridiplantae"

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tax_phylum 2

tax_clade 2

tax_superkingdom 1

tax_kingdom 1

  • Viridiplantae · 29 ✖

bioproject 1

  • PRJNA450632 · 29 ✖

analysis 1

  • blastn · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1714249 1714249 PRJNA450632_P_NODE_21122_length_162_cov_2.267717_g20943_i0 PRJNA450632 21122 162 2.267717 3.67370154 Oryza sativa 4530 Plants Plants 196 5.89e-46   NTclustered gi|32972738|dbj|AK062720.1| 39947 g20943 i0 94.531 0.790123456790123 128 6 78 1 1 127 175 48 Oryza sativa Japonica Group cDNA clone:001-106-D03, full insert sequence blastn 128 196 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
1714436 1714436 PRJNA450632_P_NODE_7742_length_321_cov_1.360140_g7563_i0 PRJNA450632 7742 321 1.36014 4.3660494 Oryza sativa 4530 Plants Plants 455 1.96e-123   NTclustered gi|32971027|dbj|AK061009.1| 39947 g7563 i0 92.212 110.663551401869 321 25 100 0 1 321 347 27 Oryza sativa Japonica Group cDNA clone:006-204-A10, full insert sequence blastn 35523 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
2367970 2367970 PRJNA450632_P_NODE_18242_length_179_cov_2.423611_g18063_i0 PRJNA450632 18242 179 2.423611 4.33826369 Poaceae 4479 Plants Plants 230 6.529999999999999e-56   NTclustered gi|2123985062|ref|XM_044583961.1| 4565 g18063 i0 90 183.379888268156 180 14 99 4 1 178 507 330 PREDICTED: Triticum aestivum polyubiquitin 11-like (LOC123166191), mRNA blastn 32825 230 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
3643538 3643538 PRJNA450632_P_NODE_11903_length_239_cov_1.642157_g11724_i0 PRJNA450632 11903 239 1.642157 3.92475523 Asphodelaceae 51383 Plants Plants 442 1.0899999999999994e-119   NTclustered gi|2288454417|gb|ON641362.1| 34199 g11724 i0 100 196 239 0 100 0 1 239 104796 105034 Aloe vera isolate BPTPS162 voucher LISE:96473 chloroplast, complete genome blastn 46844 442 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Asphodelaceae Aloe Aloe vera
4266152 4266152 PRJNA450632_P_NODE_11664_length_242_cov_4.599034_g11485_i0 PRJNA450632 11664 242 4.599034 11.12966228 Schizopepon bryoniifolius 328388 Plants Plants 394 3.14e-105   NTclustered gi|66276230|gb|AY968400.1| 328388 g11485 i0 96.266 99.5909090909091 241 8 99 1 2 242 1385 1624 Schizopepon bryoniifolius 18S ribosomal RNA gene, complete sequence blastn 24101 394 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Schizopepon Schizopepon bryoniifolius
4266284 4266284 PRJNA450632_P_NODE_17004_length_188_cov_1.542484_g16825_i0 PRJNA450632 17004 188 1.542484 2.89986992 Stichococcus bacillaris 37433 Plants Plants 320 4e-83   NTclustered gi|371782093|emb|HE610125.1| 37433 g16825 i0 97.34 99.8936170212766 188 5 100 0 1 188 4628 4441 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 18780 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
4920710 4920710 PRJNA450632_P_NODE_20684_length_165_cov_1.184615_g20505_i0 PRJNA450632 20684 165 1.184615 1.95461475 Magnoliopsida 3398 Plants Plants 302 1.24e-77   NTclustered gi|2273789310|gb|MZ391807.1| 3635 g20505 i0 100 188.757575757576 163 0 99 0 1 163 110087 109925 Gossypium hirsutum voucher L_oaxbrown4 chloroplast, complete genome blastn 31145 305 0.99016393442623 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium hirsutum
5543165 5543165 PRJNA450632_P_NODE_20385_length_166_cov_2.213740_g20206_i0 PRJNA450632 20385 166 2.21374 3.6748084 Oryza sativa 4530 Plants Plants 307 2.69e-79   NTclustered gi|32973058|dbj|AK063040.1| 39947 g20206 i0 100 1 166 0 100 0 1 166 592 427 Oryza sativa Japonica Group cDNA clone:001-110-D05, full insert sequence blastn 166 307 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
6195590 6195590 PRJNA450632_P_NODE_21545_length_160_cov_3.224000_g21366_i0 PRJNA450632 21545 160 3.224 5.1584 Magnoliopsida 3398 Plants Plants 285 1.2e-72   NTclustered gi|2514573364|ref|XR_008925445.1| 3562 g21366 i0 98.75 100 160 2 100 0 1 160 660 819 PREDICTED: Spinacia oleracea 28S ribosomal RNA (LOC130465154), rRNA blastn 16000 285 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Chenopodiaceae Spinacia Spinacia oleracea
6816929 6816929 PRJNA450632_P_NODE_12646_length_229_cov_2.072165_g12467_i0 PRJNA450632 12646 229 2.072165 4.74525785 Oryza sativa 4530 Plants Plants 424 3.76e-114   NTclustered gi|32971027|dbj|AK061009.1| 39947 g12467 i0 100 55.8689956331878 229 0 100 0 1 229 776 548 Oryza sativa Japonica Group cDNA clone:006-204-A10, full insert sequence blastn 12794 424 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
8092305 8092305 PRJNA450632_P_NODE_10927_length_253_cov_1.995413_g10748_i0 PRJNA450632 10927 253 1.995413 5.04839489 Oryza sativa 4530 Plants Plants 462 8.95e-126   NTclustered gi|32972574|dbj|AK062556.1| 39947 g10748 i0 99.605 9.45454545454546 253 1 100 0 1 253 309 561 Oryza sativa Japonica Group cDNA clone:001-104-H10, full insert sequence blastn 2392 462 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
8745506 8745506 PRJNA450632_P_NODE_12207_length_235_cov_1.575000_g12028_i0 PRJNA450632 12207 235 1.575 3.70125 Viridiplantae 33090 Plants Plants 435 1.79e-117   NTclustered gi|2567340187|gb|OR475658.1| 3175 g12028 i0 100 99.9872340425532 235 0 100 0 1 235 1002 768 Klebsormidium flaccidum strain SAG 2307 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23497 435 1 Eukaryota   Viridiplantae Streptophyta Klebsormidiophyceae Klebsormidiales Klebsormidiaceae Klebsormidium Klebsormidium flaccidum
8745513 8745513 PRJNA450632_P_NODE_14207_length_212_cov_1.604520_g14028_i0 PRJNA450632 14207 212 1.60452 3.4015824 Magnoliopsida 3398 Plants Plants 339 1.28e-88   NTclustered gi|2649040477|ref|XR_009897791.1| 3517 g14028 i0 95.327 100.042452830189 214 8 100 2 1 212 2633 2420 PREDICTED: Alnus glutinosa 28S ribosomal RNA (LOC133855990), rRNA blastn 21209 342 0.991228070175439 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Betulaceae Alnus Alnus glutinosa
9367049 9367049 PRJNA450632_P_NODE_11348_length_247_cov_1.037736_g11169_i0 PRJNA450632 11348 247 1.037736 2.56320792 Oryza sativa 4530 Plants Plants 435 1.9e-117   NTclustered gi|32990362|dbj|AK105153.1| 39947 g11169 i0 98.387 1.00404858299595 248 2 100 2 1 247 303 57 Oryza sativa Japonica Group cDNA clone:001-103-F03, full insert sequence blastn 248 435 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
12571416 12571416 PRJNA450632_P_NODE_14570_length_208_cov_6.236994_g14391_i0 PRJNA450632 14570 208 6.236994 12.97294752 Poaceae 4479 Plants Plants 385 1.58e-102   NTclustered gi|1877194149|gb|MT784108.1| 4509 g14391 i0 100 100 208 0 100 0 1 208 4961 5168 Dactylis glomerata isolate DM138 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, region blastn 20800 385 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Dactylis Dactylis glomerata
13192847 13192847 PRJNA450632_P_NODE_16911_length_189_cov_1.149351_g16732_i0 PRJNA450632 16911 189 1.149351 2.17227339 Oryza sativa 4530 Plants Plants 344 2.39e-90   NTclustered gi|32990362|dbj|AK105153.1| 39947 g16732 i0 99.471 1 189 1 100 0 1 189 751 563 Oryza sativa Japonica Group cDNA clone:001-103-F03, full insert sequence blastn 189 344 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
15120334 15120334 PRJNA450632_P_NODE_16332_length_193_cov_1.848101_g16153_i0 PRJNA450632 16332 193 1.848101 3.56683493 Magnoliopsida 3398 Plants Plants 327 2.47e-85   NTclustered gi|2306646691|gb|OK323375.1| 4639 g16153 i0 98.387 186.072538860104 186 3 96 0 1 186 111161 110976 Ensete ventricosum cultivar Bedadeti chloroplast, complete genome blastn 35912 327 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Ensete Ensete ventricosum
15742256 15742256 PRJNA450632_P_NODE_9593_length_276_cov_2.618257_g9414_i0 PRJNA450632 9593 276 2.618257 7.22638932 Oryza sativa 4530 Plants Plants 510 3.48e-140   NTclustered gi|32972846|dbj|AK062828.1| 39947 g9414 i0 100 2.34782608695652 276 0 100 0 1 276 464 189 Oryza sativa Japonica Group cDNA clone:001-107-G02, full insert sequence blastn 648 510 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
16395142 16395142 PRJNA450632_P_NODE_13373_length_220_cov_3.189189_g13194_i0 PRJNA450632 13373 220 3.189189 7.0162158 Magnoliopsida 3398 Plants Plants 401 1.6799999999999993e-107   NTclustered gi|1777738|gb|U42813.1|VCU42813 23278 g13194 i0 99.545 99.9090909090909 220 1 100 0 1 220 642 861 Vahlia capensis 18S ribosomal RNA gene, partial sequence blastn 21980 401 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vahliales Vahliaceae Vahlia Vahlia capensis
16395180 16395180 PRJNA450632_P_NODE_23853_length_151_cov_1.353448_g23674_i0 PRJNA450632 23853 151 1.353448 2.04370648 Trebouxia 13786 Plants Plants 206 8.94e-49   NTclustered gi|2105087|emb|Z95381.1| 53268 g23674 i0 91.391 89.8013245033113 151 12 99 1 1 150 995 1145 T.arboricola 26S rRNA gene blastn 13560 206 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia arboricola
19565296 19565296 PRJNA450632_P_NODE_2916_length_628_cov_3.219224_g2760_i0 PRJNA450632 2916 628 3.219224 20.21672672 Oryza sativa 4530 Plants Plants 1144 0   NTclustered gi|32971027|dbj|AK061009.1| 39947 g2760 i0 99.522 110.859872611465 628 3 100 0 1 628 1397 770 Oryza sativa Japonica Group cDNA clone:006-204-A10, full insert sequence blastn 69620 1144 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
19565348 19565348 PRJNA450632_P_NODE_5356_length_419_cov_4.096354_g5177_i0 PRJNA450632 5356 419 4.096354 17.16372326 Cucumis sativus 3659 Plants Plants 761 0   NTclustered gi|1784847360|ref|XR_004218744.1| 3659 g5177 i0 99.522 99.909307875895 418 2 99 0 1 418 1461 1878 PREDICTED: Cucumis sativus 28S ribosomal RNA (LOC116405652), rRNA blastn 41862 761 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis sativus
20840973 20840973 PRJNA450632_P_NODE_18597_length_177_cov_1.676056_g18418_i0 PRJNA450632 18597 177 1.676056 2.96661912 Microglena uva-maris 327073 Plants Plants 250 4.94e-62   NTclustered gi|66864279|gb|DQ015734.1| 327073 g18418 i0 92.09 86.5028248587571 177 14 100 0 1 177 2953 3129 Microglena uva-maris strain SAG 19.89 26S ribosomal RNA gene, partial sequence blastn 15311 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Microglena Microglena uva-maris
21494384 21494384 PRJNA450632_P_NODE_19317_length_172_cov_2.131387_g19138_i0 PRJNA450632 19317 172 2.131387 3.66598564 Chlamydomonas 3052 Plants Plants 122 1.0799999999999999e-23   NTclustered gi|18144|emb|X53574.1| 3055 g19138 i0 80.117 38.1046511627907 171 28 98 6 5 172 1446 1613 C. reinhardtii Cblp gene for a G protein beta subunit-like polypeptide blastn 6554 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22115683 22115683 PRJNA450632_P_NODE_11998_length_237_cov_8.698020_g11819_i0 PRJNA450632 11998 237 8.69802 20.6143074 Cryptomeria japonica 3369 Plants Plants 115 2.67e-21   NTclustered gi|2571391315|ref|XR_009371756.1| 3369 g11819 i0 85.088 41.3924050632911 114 16 48 1 2 115 1839 1951 PREDICTED: Cryptomeria japonica 28S ribosomal RNA (LOC131873871), rRNA blastn 9810 115 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
22115989 22115989 PRJNA450632_P_NODE_24198_length_150_cov_1.017391_g24019_i0 PRJNA450632 24198 150 1.017391 1.5260865 Oryza sativa 4530 Plants Plants 272 8.609999999999998e-69   NTclustered gi|32969792|dbj|AK059774.1| 39947 g24019 i0 99.333 5.53333333333333 150 1 100 0 1 150 651 800 Oryza sativa Japonica Group cDNA clone:006-204-A02, full insert sequence blastn 830 272 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
22116070 22116070 PRJNA450632_P_NODE_6818_length_351_cov_2.702532_g6639_i0 PRJNA450632 6818 351 2.702532 9.48588732 Cannabis sativa 3483 Plants Plants 52.8 0.033   NTclustered gi|2748542102|gb|CP158651.1| 3483 g6639 i0 100 0.239316239316239 28 0 8 0 25 52 55229087 55229060 Cannabis sativa cultivar ERBxHO40_23 chromosome 6 blastn 84 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
23391337 23391337 PRJNA450632_P_NODE_10719_length_257_cov_1.463964_g10540_i0 PRJNA450632 10719 257 1.463964 3.76238748 Oryza sativa 4530 Plants Plants 470 5.45e-128   NTclustered gi|32972448|dbj|AK062430.1| 39947 g10540 i0 99.611 1 257 1 100 0 1 257 415 159 Oryza sativa Japonica Group cDNA clone:001-102-H08, full insert sequence blastn 257 470 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
23391738 23391738 PRJNA450632_P_NODE_4139_length_498_cov_2.287257_g3965_i0 PRJNA450632 4139 498 2.287257 11.39053986 Oryza sativa 4530 Plants Plants 898 0   NTclustered gi|32972508|dbj|AK062490.1| 39947 g3965 i0 99.197 1 498 4 100 0 1 498 517 20 Oryza sativa Japonica Group cDNA clone:001-103-H06, full insert sequence blastn 498 898 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;