RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA450343" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA450343 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9366936 9366936 PRJNA450343_P_NODE_10228_length_170_cov_1.264463_g10160_i0 PRJNA450343 10228 170 1.264463 2.1495871 Halichondria panicea 6063 Porifera other_Eukaryota 119 1.3800000000000001e-22   NTclustered gi|2719047883|ref|XM_064532147.1| 6063 g10160 i0 81.081 7.74705882352941 148 28 87 0 1 148 3822 3675 PREDICTED: Halichondria panicea colorectal mutant cancer protein-like (LOC135336384), mRNA blastn 1317 119 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
11917748 11917748 PRJNA450343_P_NODE_10130_length_171_cov_1.245902_g10062_i0 PRJNA450343 10130 171 1.245902 2.13049242 Halichondria sp. AR-2003 232262 Porifera other_Eukaryota 128 2.31e-25   NTclustered gi|32967411|gb|AY226060.1| 232262 g10062 i0 80.117 10.1345029239766 171 34 100 0 1 171 450 280 Halichondria sp. AR-2003 beta-tubulin mRNA, partial cds blastn 1733 128 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria sp. AR-2003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;