RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA450343" and tax_phylum = "Nemertea"

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tax_superkingdom 1

tax_phylum 1

  • Nemertea · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA450343 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11917784 11917784 PRJNA450343_P_NODE_1930_length_396_cov_2.057637_g1862_i0 PRJNA450343 1930 396 2.057637 8.14824252 Lineus longissimus 88925 Nemertea other_Eukaryota 333 1.21e-86   NTclustered gi|2724533766|ref|XM_064768374.1| 88925 g1862 i0 85.185 18.1136363636364 324 48 82 0 1 324 376 53 PREDICTED: Lineus longissimus histone H2A.V (LOC135485947), mRNA blastn 7173 333 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus
11917817 11917817 PRJNA450343_P_NODE_5530_length_226_cov_1.440678_g5462_i0 PRJNA450343 5530 226 1.440678 3.25593228 Lineus longissimus 88925 Nemertea other_Eukaryota 226 1.12e-54   NTclustered gi|2724592806|ref|XM_064775528.1| 88925 g5462 i0 85.068 17.1991150442478 221 33 98 0 1 221 1099 1319 PREDICTED: Lineus longissimus serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like (LOC135489900), transcript variant X3, mRNA blastn 3887 226 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus
17016379 17016379 PRJNA450343_P_NODE_4594_length_248_cov_1.025126_g4526_i0 PRJNA450343 4594 248 1.025126 2.54231248 Lineus longissimus 88925 Nemertea other_Eukaryota 161 3.5699999999999995e-35   NTclustered gi|2724535822|ref|XM_064778075.1| 88925 g4526 i0 84.024 6.15322580645161 169 25 68 2 78 245 85 252 PREDICTED: Lineus longissimus WW domain-binding protein 11-like (LOC135492013), mRNA blastn 1526 161 1 Eukaryota Opisthokonta Metazoa Nemertea Pilidiophora Heteronemertea Lineidae Lineus Lineus longissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;